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Refactor scripts into a CLI#6

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thompsonmj wants to merge 18 commits intomainImageomics/wing-segmentation:mainfrom feature/start-cliImageomics/wing-segmentation:feature/start-cliCopy head branch name to clipboard

+1,611-1

Commits

Commits on Sep 18, 2024

• Begin CLI packaging

  thompsonmj

  committed
  5a161d1

• Begin documenting CLI development section

  thompsonmj

  committed
  a0f6d25

Commits on Sep 19, 2024

• Implement resizing

  thompsonmj

  committed
  a2d570a

• Document resizing

  thompsonmj

  committed
  9bfd5c5

Commits on Oct 2, 2024

• Functionality checkpoint

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  thompsonmj

  committed
  53a147d

Commits on Oct 3, 2024

• Defer import of Segmenter to speed up help message printing

  Show description for 0f4ef69
  thompsonmj

  committed
  0f4ef69

Commits on Oct 4, 2024

• Add completely custom output directory option

  thompsonmj

  committed
  fad9b67

• Delete stray comment

  thompsonmj

  committed
  dc6f9a2

• Move resize interpolations to constants file

  thompsonmj

  committed
  edc1acb

• Housekeeping and argument validation fixes

  thompsonmj

  committed
  afec2f8

Commits on Oct 7, 2024

• Provide output logging and clean up run scanner

  thompsonmj

  committed
  676477a

• Only use serial processing

  Show description for 344c270
  thompsonmj

  committed
  344c270

Commits on Nov 25, 2024

• Rename background removal options to be more intuitive

  thompsonmj

  committed
  d5d6773

• Add usage and examples

  thompsonmj

  committed
  7869894

• Code blocks with console

  thompsonmj

  committed
  739b4ff

• Add bbox padding suggestiong

  thompsonmj

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  c0731fa

Commits on Dec 2, 2024

• Edit development installation instructions

  thompsonmj

  committed
  0715a32

• Add CLI development disclaimer

  thompsonmj

  committed
  9841170