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Supporting simple queries over ontology annotations in dataframes, using UberGraph queries

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Pandasaurus

STATUS: BETA

A python library supporting simple queries over ontology annotations in dataframes, using UberGraph queries.

The aim for now is to keep this as a very simple independent Python lib avoiding any complex dependencies.

With the basic library in place, the first planned use for this is as a base for a library that provides simple enrichement and querability to AnnData Cell X Gene matrices following the CZ single cell curation standard.

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Supporting simple queries over ontology annotations in dataframes, using UberGraph queries

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