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Creating notebook to ingest CloudSQL database using kubernetes docs #751

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@german-grandas german-grandas commented Jul 26, 2024

The idea with this PR is create a jupyter notebook, as happens on rag/example_notebooks/rag-kaggle-ray-sql-latest.ipynb, showing the required steps to answer questions using the kubernetes docs instead of use the netflix reviews database.

@german-grandas german-grandas changed the title Creating notebook to ingest CloudSQL database using kubernetes Creating notebook to ingest CloudSQL database using kubernetes docs Jul 26, 2024
@german-grandas german-grandas requested a review from imreddy13 July 26, 2024 23:04
@german-grandas german-grandas enabled auto-merge (squash) July 31, 2024 15:27
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Can you update the e2e test, i.e. test rag to use this notebook. After verifying this works, we also need to update the tutorial https://github.com/GoogleCloudPlatform/ai-on-gke/blame/main/applications/rag/README.md to use it.

    - Updating test_rag.py so the test can validate answers from the kubernetes documentation.
    - Updating cloudbuild.yaml to ingest the database with the kubernetes documentation.
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gongmax commented Oct 16, 2024

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Accessing through frontend UI, I got:
1, Error pg8000.exceptions.DatabaseError: {'S': 'ERROR', 'V': 'ERROR', 'C': '42703', 'M': 'column "id" does not exist', 'P': '8', 'F': 'parse_relation.c', 'L': '3676', 'R': 'errorMissingColumn'}. This related to the column name consistency issue I commented below.
2. Warning Warning: Error: DBAPIError.__init__() missing 2 required positional arguments: 'params' and 'orig'.
Can you fix them and verify?

Besides, the whole ray job took ~40mins to finish. Do you think it makes sense to follow the previous way to utilize the Ray Dataset to processing the data, which handles the batch and distribution by itself. And utilize GPU.

"# the dataset has been pre-dowloaded to the GCS bucket as part of the notebook in the cell above. Ray workers will find the dataset readily mounted.\n",
"SHARED_DATASET_BASE_PATH = \"/data/kubernetes-docs/\"\n",
"\n",
"BATCH_SIZE = 100\n",
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Where is the BATCH_SIZE being used?

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Is not required in this scenario, I removed it.

" entrypoint=\"python job.py\",\n",
" # Path to the local directory that contains the entrypoint file.\n",
" runtime_env={\n",
" \"working_dir\": \"/home/jovyan/rag-app\", # upload the local working directory to ray workers\n",
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This seems work but can you help me to understand why the working_dir looks like this, specifically the jovyan part?

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I wasn't sure so I took the same approach from

" \"working_dir\": \"/home/jovyan/rag-app\", # upload the local working directory to ray workers\n",
, there the working dir is setup as /home/jovyan/rag-app\ is updated so just can be /home/rag-app\

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Regarding to this, I think we prefer the interactive pattern which rag-kaggle-ray-sql-interactive.ipynb followes. It would be great if we can follow the pattern in this notebook.

applications/rag/README.md Show resolved Hide resolved
"ray.shutdown()"
]
}
],
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Similar as what we did before, can we add a cell to verify the embeddings got created and stored in the database correctly?

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Added on line 194.

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" \n",
" splits = splitter.split_documents(pages)\n",
"\n",
" chunks = []\n",
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The variable name chunks is confusing here, it sounds more like the raw data chunks before embedding

Comment on lines +177 to +180
" \"langchain_id\" : id,\n",
" \"content\" : page_content,\n",
" \"embedding\" : embedded_document,\n",
" \"langchain_metadata\" : file_metadata\n",
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Can this even work? The keys of the split_data do not match the schema of TextEmbedding.

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gongmax commented Oct 29, 2024

See error sqlalchemy.exc.DatabaseError: (pg8000.exceptions.DatabaseError) {'S': 'ERROR', 'V': 'ERROR', 'C': '23502', 'M': 'null value in column "id" of relation "rag_embeddings_db" violates not-null constraint', 'D': 'Failing row contains (null, null, null).', 's': 'public', 't': 'rag_embeddings_db', 'c': 'id', 'F': 'execMain.c', 'L': '1974', 'R': 'ExecConstraints'} when running the notebook. May related to my above comment about the DB schema mis-match. The same error also happened in the CI, which means the e2e test here is not sufficient enough, i.e, even without populate the vector DB successfully, the e2e test still passes uncorrectly.

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4 participants