please work

GoekeLab · Nov 22, 2023 · f259ae2 · f259ae2
1 parent 2f42951
commit f259ae2
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Showing 2 changed files with 17 additions and 2 deletions.
diff --git a/xpore/test/data/config.yml b/xpore/test/data/config.yml
@@ -2,9 +2,9 @@ notes: Pairwise comparison without replicates with default parameter setting.
 
 data:
     KO:
-        rep1: ./data/HEK293T-METTL3-KO-rep1/dataprep
+        rep1: data/data/HEK293T-METTL3-KO-rep1/dataprep
     WT:
-        rep1: ./data/HEK293T-WT-rep1/dataprep    
+        rep1: data/data/HEK293T-WT-rep1/dataprep    
 
 out: ./out
 

diff --git a/xpore/test/neues_config.yml b/xpore/test/neues_config.yml
@@ -0,0 +1,15 @@
+notes: Pairwise comparison without replicates with default parameter setting.
+
+data:
+    KO:
+        rep1: /mnt/dataHDD/wanyk/run_others/GIS_Hct116_directRNA_Rep2-Run1/xpore/xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep
+    WT:
+        rep1: /mnt/dataHDD/wanyk/run_others/GIS_Hct116_directRNA_Rep2-Run1/xpore/xpore/test/data/data/HEK293T-WT-rep1/dataprep
+
+out: ./out
+
+method:
+    prefiltering:
+        method: t-test
+        threshold: 0.1
+