VISCtemplates 1.3.2

Bug Fix

• Fix issue with insert_break() not inserting page breaks at times (#216)

Other improvements

• Reconcile differences between empty report template and other report templates (#204)
• Remove dependency on the full tidyverse, per best practices (#213)

VISCtemplates 1.3.1

Bug Fix

• Re-flip Fred Hutch and SCHARP header logos to fix regression from #196, restoring intended logo positions in #195 (#205)

VISCtemplates 1.3.0

Bug Fixes

• Fix major bug that broke PDF knitting on pandoc >= 3.1.7 (#159)
• Fix bug with latex packages (specifically etex's \reserveinserts command) that broke PDF knitting (#160)
• Fix bug that occurred when a report subdirectory did not already exist, and add unit test (#173)
• Fix insert_break() to actually create a page break (#188)
  • Update documentation to instruct users to use \newpage instead in new code

Improvements to Report Templates

• Update header logo for SCHARP/Fred Hutch branding compliance (#195)
• Update templates and documentation for using correct syntax for multiple citations (#191)
• Add section number to References section in PDF output (#176)
• Clarify expectations for Background section of report (#143)
• Fix BAMA positivity call definition (#144)
• Add Acknowledgments section to report templates (#153)

Testing and Continuous Integration

• Create unit tests to test knit all report templates to PDF and Word (#168, #182, #186, #187, #192)
  • Test locally via devtools::test(); files written to testthat/_snaps
  • On pull requests, test reports are written to file snapshots on GitHub Actions
• Add GitHub Actions runner to test statsrv compatibility by matching its R and pandoc versions (#172)
• Add interactive = FALSE option to interactive functions to facilitate automated unit testing (#168)
• Speed up GitHub Action that renders skeleton.Rmd (#166)
  • But then remove it entirely once superseded by more thorough test knitting (#178)

Documentation and UI Improvements

• Fix bad URL in GitHub setup instructions (#185)
• Add guidance for where to install data packages (#154)
• Add friendly error message to visc_load_pdata() when data package is not installed (#152)
• Specify existence of NAb template in README and vignettes (#189)

Package Maintenance

• Adjust filenames in R/ and tests/ to follow best practices (#175, #179)
• Respect existing getOption('repos') instead of forcing CRAN installations (#163)
• Adjust dependencies in DESCRIPTION (#164)
• Update package authors and maintainer (#190)
• Clean up latex template code, removing commented-out code and reorganizing for better readability (#196)

Release 1.2.0

Summarize changes since 1.1.0 release.

• Update Fred Hutch logo in Word and PDF templates
• Fix continuous integration issues (GitHub actions)
• New GitHub action to auto-generate empty report template in Word and PDF (for verifying format with PRs) and associated template fixes
• Fix double section numbering issue in Word doc template
• Add visc_load_pdata and DataPackageR to Rmd template code

Release 1.1.0

Improvements to use_visc_report():

• A new NAb assay template.
• This function reminds the user to use VISC's report naming convention.

Release 1.0.0

This release implements assay-specific report templates with the create_visc_report() function. See the NEWS for more info.

Version 0.3.0

• New "empty" report template without the boilerplate PT report text.
  • Go to File > New File > Rmarkdown... > From Template and select the "Empty Report" template.
  • Or use template = "visc_empty" argument in rmarkdown::draft().
  • See the updated vignette for more info.
• Changes to bibliography.bib file.
  • Shortened file contains only citations used in VISC reports.
  • A project-level bibliography.bib file is written to the docs/ directory. Previously there was one file generated for each report.
• New Github PR text links to the documentation for writing and code review.
• Bug fixes:
  • Footnote hyperlinks fixed: Footnote text (^[MY_FOOTNOTE]).