Add GitHub action to automatically render skeleton.Rmd when pull requests are made #15
Workflow file for this run
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| # Workflow derived from https://rfortherestofus.com/2023/05/github-actions | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: [ master, main, develop ] | |
| name: render-visc-empty-skeleton-rmd | |
| jobs: | |
| render-visc-empty-skeleton-rmd: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout VISCtemplates repo | |
| uses: actions/checkout@v4 | |
| - name: Install pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Set up tinytex | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install R packages from VISCtemplates DESCRIPTION file and any others needed | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: | | |
| any::remotes | |
| any::devtools | |
| any::conflicted | |
| any::tidyverse | |
| - name: Install VISCfunctions from GitHub | |
| run: | | |
| Rscript -e 'remotes::install_github("FredHutch/VISCfunctions")' | |
| - name: Install VISCtemplates | |
| run: | | |
| Rscript -e 'devtools::install()' | |
| - name: Render visc_empty Rmarkdown skeleton report and Commit Results | |
| run: | | |
| Rscript -e 'rmarkdown::render("inst/rmarkdown/templates/visc_empty/skeleton/skeleton.Rmd", output_format="all")' | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add inst/rmarkdown/templates/visc_empty/skeleton/skeleton.pdf | |
| git add inst/rmarkdown/templates/visc_empty/skeleton/skeleton.docx | |
| git commit -m 'Re-build visc_empty skeleton Rmd' || echo "No changes to commit" | |
| git push origin || echo "No changes to commit" |