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1. Thesis Thesis Public

   Masters Thesis: Improved Batch Correction of scRNA-seq Data Using a Generative Adversarial Network (GAN)

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2. scIntegration scIntegration Public

   Single-cell omics integration using deep generative models. Work-in-progress. Everything from exploratory data analysis to model building and testing.

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3. Single-Cell-Fuzzy-Labels Single-Cell-Fuzzy-Labels Public

   This GitHub repo offers a method for label transfer in single-cell RNA-seq data using shared embeddings from foundation models. It leverages language model APIs (GPT-3.5 or 4) for harmonizing labe…

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4. medLIB_3D medLIB_3D Public

   A user-focused, multi-functional, flexible and extensible medical imaging library focused on acquiring, preparing and catolouging data for use with machine learning.

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5. nbdev_demo nbdev_demo Public

   nbdev tutorial workthrough

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6. Eamonmca Eamonmca Public

   Config files for my GitHub profile.