now try a real workflow

.github/workflows/build.yaml

@@ -0,0 +1,34 @@
+
+on:
+  workflow_call:
+    inputs:
+      compiler:
+        type: string
+        required: true
+
+jobs:
+  test:
+    if: always()
+    env:
+      CC: mpicc
+      FC: mpifort
+      CXX: mpicxx
+      CIME_MODEL: cesm
+      CIME_DRIVER: nuopc
+    # needs: setup
+    runs-on: hpc-runner
+    steps:
+      - name: Run ${{ inputs.compiler }} tests
+        continue-on-error: true
+        run: |
+          pwd
+          cd cime/scripts
+          module load cmake
+          qcmd -q main -v PROJECT=P93300606 -A P93300606 -l walltime=02:00:00 -- ./create_test --xml-machine derecho\
+              --xml-category github --no-run --compiler ${{ inputs.compiler }} --test-id ${GITHUB_RUN_ID}${{ inputs.compiler }}
+      - name: check status
+        run: |
+          cd $SCRATCH
+          # if no fails and no passes in expected fails then exit 0 otherwise exit 1
+          ./cs.status.${GITHUB_RUN_ID}${{ inputs.compiler }} --expected-fails-file $GITHUB_WORKSPACE/cime_config/testfiles/ExpectedTestFails.xml | grep FAIL | grep -v FAILURE || exit 0
+          exit 1

.github/workflows/derecho.yaml

@@ -7,12 +7,28 @@ on:
     types: [ labeled ]
 
 jobs:
-  build:
+
+  setup:
     if: ${{ github.event.label.name == 'run-pr-tests' }}
     runs-on: hpc-runner
-
+   
     steps:
-    - uses: actions/checkout@v3
-    - name: Run a one-line script
-      run: echo Hello one, world!
-
+    - name: Prepare system
+      run: |
+        rm -fr $SCRATCH/cs.s* $SCRATCH/SMS_Ld2* $GITHUB_WORKSPACE
+        mkdir  $GITHUB_WORKSPACE
+    - name: Checkout code
+      uses: actions/checkout@v4
+    - name: Run git-fleximod
+      run: |
+        pwd
+        module list
+        ./bin/git-fleximod update
+
+  build:
+    strategy:
+      matrix:
+        compiler: [gnu, intel, intel-oneapi, nvhpc]
+    uses: ./.github/workflows/build.yaml
+    with:
+      compiler: ${{ matrix.compiler }}

.gitmodules

@@ -28,9 +28,9 @@
 
 [submodule "ccs_config"]
         path = ccs_config
-        url = https://github.com/ESMCI/ccs_config_cesm.git
+        url = https://github.com/jedwards4b/ccs_config_cesm.git
         fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git
-        fxtag = ccs_config_cesm1.0.10
+        fxtag = ccs_config_cesm1.0.10_update_default_ww3grid03
         fxrequired = ToplevelRequired
 
 [submodule "cime"]
@@ -56,9 +56,9 @@
 
 [submodule "cam"]
         path = components/cam
-        url = https://www.github.com/ESCOMP/CAM
+        url = https://www.github.com/jedwards4b/CAM
         fxDONOTUSEurl = https://www.github.com/ESCOMP/CAM
-        fxtag = cam6_4_046
+        fxtag = remove_mct_submodule_update_config_component01
         fxrequired = ToplevelRequired
 
 [submodule "clm"]

cime_config/config_compsets.xml

@@ -36,50 +36,64 @@
     - grid  (optional regular expression match for grid to work with the compset)
   </help>
 
-  <!-- 1850 compsets Default, Mosart, Wave for CESM3 -->
+  <!-- Concentration driven compsets for CESM3 -->
 
   <compset>
-    <alias>BLT1850</alias>
-    <lname>1850_CAM70%LT_CLM60%BGC-CROP_CICE_MOM6_MOSART_DGLC%NOEVOLVE_SWAV</lname>
+    <alias>B1850C_MTt4s</alias>
+    <lname>1850C_CAM70%MT%CT4S_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
   </compset>
-
   <compset>
-    <alias>BLT1850_MARBL</alias>
-    <lname>1850_CAM70%LT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_SWAV</lname>
+    <alias>B1850CM</alias>
+    <lname>1850C_CAM70%MT%CT4S_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
   </compset>
 
-  <compset>
-    <alias>BMT1850_MARBL</alias>
-    <lname>1850_CAM70%MT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_SWAV</lname>
-  </compset>
 
   <compset>
-    <alias>BLTHIST</alias>
-    <lname>HIST_CAM70%LT_CLM60%BGC-CROP_CICE_MOM6_MOSART_DGLC%NOEVOLVE_SWAV</lname>
+    <alias>B1850C_MTso</alias>
+    <lname>1850C_CAM70%MT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
   </compset>
-
   <compset>
     <alias>BMT1850</alias>
-    <lname>1850_CAM70%MT_CLM60%BGC-CROP_CICE_MOM6_MOSART_DGLC%NOEVOLVE_SWAV</lname>
+    <lname>1850C_CAM70%MT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
   </compset>
-
   <compset>
-    <alias>BMT1850_MARBL</alias>
-    <lname>1850_CAM70%MT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_SWAV</lname>
+    <alias>BHISTC_MTso</alias>
+    <lname>HISTC_CAM70%MT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
   </compset>
 
   <compset>
-    <alias>BMTHIST</alias>
-    <lname>HIST_CAM70%MT_CLM60%BGC-CROP_CICE_MOM6_MOSART_DGLC%NOEVOLVE_SWAV</lname>
+    <alias>BHISTC_MTt4s</alias>
+    <lname>HISTC_CAM70%MT%CT4S_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
+  </compset>
+  <compset>
+    <alias>BHISTCM</alias>
+    <lname>HISTC_CAM70%MT%CT4S_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
   </compset>
 
 
-  <!-- Prognostic wave -->
-
-
-  <!-- Data wave -->
+  <compset>
+    <alias>B1850C_LTso</alias>
+    <lname>1850C_CAM70%LT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
+  </compset>
+  <compset>
+    <alias>BLT1850</alias>
+    <lname>1850C_CAM70%LT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
+  </compset>
+  <compset>
+    <alias>BHISTC_LTso</alias>
+    <lname>HISTC_CAM70%LT_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
+  </compset>
 
+  <!-- Emissions driven compsets for CESM3 -->
 
+  <compset>
+    <alias>B1850E_MTt4s</alias>
+    <lname>1850E_CAM70%MT%CT4S_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
+  </compset>
+  <compset>
+    <alias>B1850EM</alias>
+    <lname>1850E_CAM70%MT%CT4S_CLM60%BGC-CROP_CICE_MOM6%MARBL-BIO_MOSART_DGLC%NOEVOLVE_WW3</lname>
+  </compset>
 
   <!-- SOM compsets -->
 

cime_config/config_pes.xml

@@ -75,7 +75,7 @@
 	  <rootpe_cpl>0</rootpe_cpl>
 	</rootpe>
       </pes>
-      <pes pesize="M" compset="CAM.*%MT.*MOM6%[^_]*MARBL-BIO">
+<!--      <pes pesize="M" compset="CAM.*%MT.*MOM6%[^_]*MARBL-BIO">
 	<comment></comment>
 	<ntasks>
 	  <ntasks_atm>5400</ntasks_atm>
@@ -107,10 +107,10 @@
 	  <rootpe_wav>0</rootpe_wav>
 	  <rootpe_cpl>0</rootpe_cpl>
 	</rootpe>
-      </pes>
+      </pes> -->
       <pes pesize="XL" compset="CAM.*%LT.*MOM6(?!.*%MARBL-BIO)">
 	<comment>20 ypd/ 7100 pe-hrs/simyr expected</comment>
-	<ntasks>
+  	<ntasks>
 	  <ntasks_atm>5400</ntasks_atm>
 	  <ntasks_lnd>1792</ntasks_lnd>
 	  <ntasks_rof>1792</ntasks_rof>
@@ -154,7 +154,7 @@
 	  <ntasks_ice>3608</ntasks_ice>
 	  <ntasks_ocn>3300</ntasks_ocn>
 	  <ntasks_glc>4</ntasks_glc>
-	  <ntasks_wav>1</ntasks_wav>
+	  <ntasks_wav>64</ntasks_wav>
 	  <ntasks_cpl>5400</ntasks_cpl>
 	</ntasks>
 	<nthrds>

cime_config/testfiles/ExpectedTestFails.xml

@@ -0,0 +1,48 @@
+<?xml version= "1.0"?>
+
+<expectedFails version="1.1">
+
+  <!-- Notes about the format of this file:
+
+       The required elements for a given failure are just:
+
+         <test name="...">
+           <phase name="...">
+             <status>...</status>
+           </phase>
+         </test>
+
+       There can be multiple phase blocks in a given test block.
+
+       In addition, a number of optional elements are allowed, which
+       currently are just for human consumption (not parsed by any
+       scripts):
+
+       - A phase block can contain an "issue" element, which gives the
+       issue number associated with this failure. (#123 refers to issue
+       #123 in the ESCOMP/ctsm repository. Issues in other repositories
+       should be specified as ORG/repo#123 - e.g., ESMCI/cime#123.)
+
+       - A phase block can contain a "comment" element, which gives any
+       sort of comment you desire.
+  -->
+
+
+<!--
+  <test name="SMS.res.compset.machine_compiler.clm-nofireemis">
+    <phase name="RUN">
+      <status>FAIL</status>
+      <issue>CDEPS/#243</issue>
+    </phase>
+  </test>
+-->
+  <test name="SMS_Ld2.ne30pg3_t232.BMT1850.derecho_nvhpc.allactive-defaultio">
+    <phase name="MODEL_BUILD">
+      <status>FAIL</status>
+      <issue></issue>
+      <comment></comment>
+    </phase>
+  </test>
+
+
+</expectedFails>

cime_config/testlist_allactive.xml

@@ -53,6 +53,7 @@
     <machines>
       <machine name="derecho" compiler="intel" category="aux_cime_baselines"/>
       <machine name="derecho" compiler="gnu" category="prealpha"/>
+      <machine name="derecho" compiler="intel" category="github"/>
     </machines>
     <options>
       <option name="wallclock"> 00:30:00 </option>
@@ -61,19 +62,86 @@
   <test name="SMS_Ld2" grid="ne30pg3_t232" compset="BMT1850" testmods="allactive/defaultio">
     <machines>
       <machine name="derecho" compiler="gnu" category="prealpha"/>
+      <machine name="derecho" compiler="intel" category="github"/>
     </machines>
     <options>
       <option name="wallclock"> 00:30:00 </option>
     </options>
   </test>
-  <test name="SMS_Ld2" grid="ne30pg3_t232" compset="BLT1850" testmods="allactive/defaultio">
+
+  <test name="SMS_Ld2_D" grid="ne30pg3_t232" compset="B1850C_MTt4s" testmods="allactive/defaultio">
     <machines>
-      <machine name="derecho" compiler="intel" category="prealpha"/>
+      <machine name="derecho" compiler="intel" category="github"/>
+    </machines>
+    <options>
+      <option name="wallclock"> 00:30:00 </option>
+    </options>
+  </test>
+
+  <test name="SMS_Ld2_D" grid="ne30pg3_t232" compset="BHISTC_MTt4s" testmods="allactive/defaultio">
+    <machines>
+      <machine name="derecho" compiler="intel" category="github"/>
+    </machines>
+    <options>
+      <option name="wallclock"> 00:30:00 </option>
+    </options>
+  </test>
+
+  <test name="SMS_Ld2" grid="ne30pg3_t232" compset="B1850C_MTso" testmods="allactive/defaultio">
+    <machines>
+      <machine name="derecho" compiler="intel" category="github"/>
     </machines>
     <options>
       <option name="wallclock"> 00:30:00 </option>
     </options>
   </test>
+
+  <test name="SMS_Ld2" grid="ne30pg3_t232" compset="BHISTC_MTso" testmods="allactive/defaultio">
+    <machines>
+      <machine name="derecho" compiler="intel" category="github"/>
+    </machines>
+    <options>
+      <option name="wallclock"> 00:30:00 </option>
+    </options>
+  </test>
+<!-- These are not defined in config_compsets.xml
+  <test name="SMS_Ld2" grid="ne30pg3_t232" compset="B1850C_HTs1" testmods="allactive/defaultio">
+    <machines>
+      <machine name="derecho" compiler="intel" category="github"/>
+    </machines>
+    <options>
+      <option name="wallclock"> 00:30:00 </option>
+    </options>
+  </test>
+  <test name="SMS_Ld2" grid="ne30pg3_t232" compset="BHISTC_HTs1" testmods="allactive/defaultio">
+    <machines>
+      <machine name="derecho" compiler="intel" category="github"/>
+    </machines>
+    <options>
+      <option name="wallclock"> 00:30:00 </option>
+    </options>
+  </test>
+-->
+  <test name="SMS_Ld2" grid="ne30pg3_t232" compset="B1850C_LTso" testmods="allactive/defaultio">
+    <machines>
+      <machine name="derecho" compiler="intel" category="github"/>
+    </machines>
+    <options>
+      <option name="wallclock"> 00:30:00 </option>
+    </options>
+  </test>
+
+  <test name="SMS_Ld2" grid="ne30pg3_t232" compset="BHISTC_LTso" testmods="allactive/defaultio">
+    <machines>
+      <machine name="derecho" compiler="intel" category="github"/>
+    </machines>
+    <options>
+      <option name="wallclock"> 00:30:00 </option>
+    </options>
+  </test>
+
+
+
   <!-- MCC tests do not work because FMS fails at initialization of MOM -->
   <test name="MCC" grid="ne30pg3_t232" compset="BMT1850" testmods="allactive/defaultio">
     <machines>