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@Cellular-Semantics

Cellular Semantics

Home of the Cellular Semantics Group in Cellular Genetics at the Welcome Sanger Institute
README.md

Welcome to the Cellular Semantics Team

Part of the Wellcome Sanger Institute’s Cellular Genetics Department, the Cellular Semantics Team is dedicated to advancing knowledge in cell classification and understanding cellular diversity. We specialize in developing and curating the Cell Ontology—a dynamic, structured vocabulary of cell types essential for accurate data integration and analysis in the life sciences.

Our team combines expertise in cell biology, bioinformatics, and ontology development to create precise and up-to-date definitions that support the growing fields of single-cell genomics, transcriptomics, neuroscience, and beyond. By collaborating with scientific experts worldwide, we ensure that the Cell Ontology remains a reliable resource for researchers looking to classify and analyze cellular data at scale. We are also major contributors to a suite of interconnected Open Biomedical Ontologies including the Uberon anatomy ontology.

For details, visit our team home page.

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  1. CL_KG CL_KG Public

    Building a Cell Ontology Knowledge-Base from data, and LLMs

    Python

Repositories

Showing 10 of 26 repositories
  • cellxgene-cell-reporter Public

    Reports Cell Ontology terms referenced within CellxGene

    Cellular-Semantics/cellxgene-cell-reporter’s past year of commit activity
    Python 0 0 0 0 Updated Dec 12, 2024
  • cl_kg_helper Public
    Cellular-Semantics/cl_kg_helper’s past year of commit activity
    Makefile 0 0 0 0 Updated Dec 11, 2024
  • tdt_web_portal Public Forked from vercel/nextjs-postgres-nextauth-tailwindcss-template

    TDT dashboard

    Cellular-Semantics/tdt_web_portal’s past year of commit activity
    TypeScript 0 MIT 409 0 0 Updated Dec 11, 2024
  • CL_KG Public

    Building a Cell Ontology Knowledge-Base from data, and LLMs

    Cellular-Semantics/CL_KG’s past year of commit activity
    Python 0 Apache-2.0 0 13 0 Updated Dec 11, 2024
  • human-neocortex-non-neuronal-cells Public

    Taxonomy of non-neuronal cells in the human neocortex, facilitated by Taxonomy Development Tools.

    Cellular-Semantics/human-neocortex-non-neuronal-cells’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 11, 2024
  • whole_mouse_brain_ontology Public

    A data-driven cell-type ontology of the whole mouse brain.

    Cellular-Semantics/whole_mouse_brain_ontology’s past year of commit activity
    Python 0 Apache-2.0 0 18 0 Updated Dec 11, 2024
  • cell-annotation-schema Public
    Cellular-Semantics/cell-annotation-schema’s past year of commit activity
    Python 0 GPL-3.0 0 5 0 Updated Dec 10, 2024
  • CellMetaFinder Public
    Cellular-Semantics/CellMetaFinder’s past year of commit activity
    0 0 0 0 Updated Dec 6, 2024
  • taxonomy-development-tools-cloud Public

    Web hosted taxonomy development tools backend to build and edit Cell Annotation Schema taxonomies.

    Cellular-Semantics/taxonomy-development-tools-cloud’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 3, 2024
  • CellMark Public
    Cellular-Semantics/CellMark’s past year of commit activity
    Makefile 1 1 5 0 Updated Dec 2, 2024
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