v0.5.4

• Incorporates functionality of make_input.sh directly into amplicon_classifier.py
• Users can now give a directory of AA outputs to the classifier with --AA_results, bypasing the need to make the .input file.
• Makes reading of graph file more robust
• Tweaks --filter_similar multiple comparisons p-val adjustment
• Bugfix to gene names changed for hg38
• Documentation updates