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| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| pull_request: | |
| env: | |
| GITHUB_PAT: ${{ secrets.PAT }} | |
| jobs: | |
| r-cmd-check: | |
| if: "!contains(github.event.head_commit.message, 'ci-skip')" | |
| name: R CMD check | |
| container: | |
| image: satijalab/seurat:develop | |
| runs-on: [ self-hosted ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Remove vignettes dir | |
| run: rm -rf 'vignettes/' | |
| shell: bash | |
| - name: Install additional dependencies | |
| run: | | |
| Rscript -e "remotes::install_github('mojaveazure/seurat-object', ref = 'feat/CalN_generic')" | |
| Rscript -e "remotes::install_github('bnprks/BPCells')" | |
| - name: Check | |
| run: devtools::check(args = "--no-manual", error_on = "warning", check_dir = "check", force_suggests = FALSE) | |
| shell: Rscript {0} | |
| # - name: Upload check results | |
| # if: failure() | |
| # uses: actions/upload-artifact@master | |
| # with: | |
| # name: results | |
| # path: check |