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lewis_slurm_inputs.json
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lewis_slurm_inputs.json
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{
"project_name": "Test_Soy1066",
"workflow_path": "/storage/htc/joshilab/yenc/projects/AlleleCatalog",
"input_files": [
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr01.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr02.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr03.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr04.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr05.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr06.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr07.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr08.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr09.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr10.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr11.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr12.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr13.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr14.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr15.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr16.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr17.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr18.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr19.vcf.gz",
"/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr20.vcf.gz"
],
"chromosomes": [
"Chr01",
"Chr02",
"Chr03",
"Chr04",
"Chr05",
"Chr06",
"Chr07",
"Chr08",
"Chr09",
"Chr10",
"Chr11",
"Chr12",
"Chr13",
"Chr14",
"Chr15",
"Chr16",
"Chr17",
"Chr18",
"Chr19",
"Chr20"
],
"beagle_window": 40,
"metadata_file": "/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/Soy1066_allele_line_info.txt",
"genome_version": "Wm82.a2.v1",
"gff_file": "/storage/htc/joshilab/yenc/projects/AlleleCatalog/data/test_Soy1066/Wm82.a2.v1.genes.tiny.gff",
"gff_category": "gene",
"gff_key": "Name=",
"output_folder": "/storage/htc/joshilab/yenc/projects/AlleleCatalog/output/Test_Soy1066/",
"memory": 100,
"threads": 4
}