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Fix Devtools::check() notes #119

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soriadelva opened this issue Apr 19, 2024 · 2 comments
Open

Fix Devtools::check() notes #119

soriadelva opened this issue Apr 19, 2024 · 2 comments

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@soriadelva
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@PietrH
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PietrH commented Jul 8, 2024

What are the notes that need fixing?

@soriadelva
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Here they are:

  • Package suggested but not available for checking: 'covr' Vignette dependency required without any vignettes:: 'knitr' Imports includes 23 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally.

  • License stub is invalid DCF.

  • Namespace in Imports field not imported from: 'tibble' All declared Imports should be used.

  • apply_decision_rules: no visible binding for global variable 'n' apply_decision_rules: no visible global function definition for 'bind_rows' climate_match: no visible binding for global variable 'legends' climate_match: no visible binding for global variable 'observed' climate_match: no visible binding for global variable 'future' get_table_pathways: no visible binding for global variable 'n' verify_taxa: no visible global function definition for 'starts_with' verify_taxa: no visible binding for global variable '.' verify_taxa: no visible global function definition for 'desc' visualize_pathways_level1: no visible global function definition for 'vars' visualize_pathways_level2: no visible global function definition for 'vars' visualize_pathways_year_level1: no visible global function definition for 'vars' visualize_pathways_year_level2: no visible global function definition for 'vars' Undefined global functions or variables: . bind_rows desc future legends n observed starts_with vars

  • checkRd: (-1) gbif_verify_keys.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gbif_verify_keys.Rd:20-21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gbif_verify_keys.Rd:22-23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) gbif_verify_keys.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indicator_native_range_year.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indicator_native_range_year.Rd:48-50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indicator_native_range_year.Rd:50-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indicator_native_range_year.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indicator_native_range_year.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indicator_native_range_year.Rd:53-54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indicator_native_range_year.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) indicator_native_range_year.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) legends.Rd:15: Lost braces; missing escapes or markup? 15 | \item \code{Classification}: (character) Koppen-{G}eiger climate classification value | ^ checkRd: (-1) legends.Rd:16: Lost braces; missing escapes or markup? 16 | \item \code{Description}: (character) verbose description of the Koppen-{G}eiger | ^ checkRd: (-1) legends.Rd:18: Lost braces; missing escapes or markup? 18 | \item \code{Group}: (character) group the Koppen-{G}eiger climate zone belongs to, |

  • * checking for non-standard things in the check directory ... NOTE Found the following files/directories: 'data'

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