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what is command for calculate ka ks ka/ks #637

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XuewenWangUGA opened this issue Mar 15, 2024 · 1 comment
Open

what is command for calculate ka ks ka/ks #637

XuewenWangUGA opened this issue Mar 15, 2024 · 1 comment

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@XuewenWangUGA
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Is there anyway to do ks calculation for paired gene synteny in jcvi? What is the command? I saw Ks somewhere if I remember correctly but It is different to locate it?

also it there anyone to search which function is available in jcvi?

Thanks.
@tanghaibao
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tanghaibao commented Apr 17, 2024 •
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@XuewenWangUGA

There are a bunch of utility scripts when you do:

python -m jcvi.compara.ks

There are a few dependencies that need to be on your PATH when running this script.

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@tanghaibao @XuewenWangUGA