forked from wenchichou/eQTL
-
Notifications
You must be signed in to change notification settings - Fork 0
/
selectedEnrichment.txt
63 lines (63 loc) · 6.29 KB
/
selectedEnrichment.txt
1
GWAS sig_eQTL_pvalue_Cutoff complete.cases(GWAS) GWASpvalueRangeSmall GWASpvalueRangeLarge nrow(subsetGWAS) numSubsetGWASnotINeQTL x m n k hyper P Value hyper p value * (-log)HEIGHT_hg19_Pvalue 1.00E-08 2478466 1.00E-02 1.00E-04 74546 5588 55 444 1248322 18768 0 20SCZ_hg19_Pvalue 1.00E-08 2425838 1.00E-02 1.00E-04 109473 7709 44 444 1248322 28206 1.11E-16 15.95458978UC_hg19_Pvalue 1.00E-08 1163678 1.00E-02 1.00E-04 25996 2578 29 444 1248322 12675 8.88E-16 15.05149979BMI_hg19_Pvalue 1.00E-08 2478466 1.00E-02 1.00E-04 56785 4545 29 444 1248322 14233 1.87E-14 13.72928041LDL_hg19_Pvalue 1.00E-08 2477527 1.00E-02 1.00E-04 33413 3834 25 444 1248322 9593 3.77E-15 14.42311089DBP_hg19_Pvalue 1.00E-08 2449464 1.00E-02 1.00E-04 30505 2919 23 444 1248322 8494 1.78E-14 13.75046975RA_hg19_Pvalue 1.00E-08 2427303 1.00E-02 1.00E-04 34197 3484 21 444 1248322 9345 7.44E-12 11.12814562CAD_hg19_Pvalue 1.00E-08 2412945 1.00E-02 1.00E-04 39329 4053 21 444 1248322 12477 1.57E-09 8.803755262SBP_hg19_Pvalue 1.00E-08 2449464 1.00E-02 1.00E-04 31191 2933 20 444 1248322 8665 1.32E-11 10.87960147T2D_hg19_Pvalue 1.00E-08 2414560 1.00E-02 1.00E-04 36690 4185 20 444 1248322 11470 1.94E-09 8.7132342TG_hg19_Pvalue 1.00E-08 2477564 1.00E-02 1.00E-04 33805 3538 19 444 1248322 9901 9.14E-10 9.038962679WHR_hg19_Pvalue 1.00E-08 2478470 1.00E-02 1.00E-04 35861 3999 19 444 1248322 10068 1.21E-09 8.916976013TC_hg19_Pvalue 1.00E-08 2477541 1.00E-02 1.00E-04 34899 4020 19 444 1248322 10139 1.36E-09 8.8658433ALZ_hg19_Pvalue 1.00E-08 2328879 1.00E-02 1.00E-04 32685 3497 19 444 1248322 10271 1.69E-09 8.771908531HEIGHT_hg19_Pvalue 1.00E-08 2478466 1.00E-04 1.00E-06 11656 672 18 444 1248322 2607 0 20MAP_hg19_Pvalue 1.00E-08 2449223 1.00E-02 1.00E-04 30100 2855 17 444 1248322 8365 2.42E-09 8.615934359LSBMD_CHRPOS_PVALUE_done.gz 1.00E-08 2456022 1.00E-02 1.00E-04 29754 2954 16 444 1248322 8564 2.14E-08 7.668954321HDL_hg19_Pvalue 1.00E-08 2477462 1.00E-02 1.00E-04 32737 3342 16 444 1248322 9542 9.85E-08 7.006553585FG_hg19_Pvalue 1.00E-08 2475255 1.00E-02 1.00E-04 34803 4626 16 444 1248322 9900 1.64E-07 6.784410019FI_hg19_Pvalue 1.00E-08 2475255 1.00E-02 1.00E-04 34803 4626 16 444 1248322 9900 1.64E-07 6.784410019TNF_hg19_Pvalue 1.00E-08 2477842 1.00E-02 1.00E-04 25457 3610 15 444 1248322 7702 3.01E-08 7.521011535IL6_hg19_Pvalue 1.00E-08 2464155 1.00E-02 1.00E-04 25026 2993 14 444 1248322 8016 3.02E-07 6.519519905SCZ_hg19_Pvalue 1.00E-08 2425838 1.00E-04 1.00E-06 13337 357 12 444 1248322 3078 1.59E-10 9.799123795HOMAIR_hg19_Pvalue 1.00E-08 2446947 1.00E-02 1.00E-04 29242 3235 12 444 1248322 9294 3.87E-05 4.411795432HBA1C_hg19_Pvalue 1.00E-08 2454111 1.00E-02 1.00E-04 31226 3830 12 444 1248322 9868 7.04E-05 4.152171158HOMAB_hg19_Pvalue 1.00E-08 2446000 1.00E-02 1.00E-04 27692 3206 10 444 1248322 8853 0.000406363 3.391085522UC_hg19_Pvalue 1.00E-08 1163678 1.00E-04 1.00E-06 1781 300 8 444 1248322 754 1.37E-11 10.86290173PP_hg19_Pvalue 1.00E-08 2449204 1.00E-02 1.00E-04 29612 2909 7 444 1248322 8468 0.01182868 1.927063717HEIGHT_hg19_Pvalue 1.00E-08 2478466 1.00E-10 1.00E-20 2655 134 6 444 1248322 388 1.52E-10 9.819201404LSBMD_CHRPOS_PVALUE_done.gz 1.00E-08 2456022 1.00E-04 1.00E-06 1938 37 6 444 1248322 470 5.71E-10 9.243082338HEIGHT_hg19_Pvalue 1.00E-08 2478466 1.00E-08 1.00E-10 1943 180 5 444 1248322 453 1.98E-08 7.702797757TC_hg19_Pvalue 1.00E-08 2477541 1.00E-06 1.00E-08 1415 175 5 444 1248322 337 3.44E-09 8.463490292HEIGHT_hg19_Pvalue 1.00E-08 2478466 1.00E-06 1.00E-08 3848 305 5 444 1248322 891 1.02E-06 5.989988113RA_hg19_Pvalue 1.00E-08 2427303 1.00E-04 1.00E-06 3106 359 5 444 1248322 719 2.96E-07 6.528279781TC_hg19_Pvalue 1.00E-08 2477541 1.00E-04 1.00E-06 3827 352 4 444 1248322 927 2.40E-05 4.620675624BIP_hg19_Pvalue 1.00E-08 2415111 1.00E-02 1.00E-04 42352 3744 4 444 1248322 11803 0.4096928 0.387541668RA_hg19_Pvalue 1.00E-08 2427303 1.00E-06 1.00E-08 1312 246 3 444 1248322 272 3.26E-06 5.486595534CAD_hg19_Pvalue 1.00E-08 2412945 1.00E-04 1.00E-06 1570 101 3 444 1248322 480 3.01E-05 4.521087217BMI_hg19_Pvalue 1.00E-08 2478466 1.00E-04 1.00E-06 3908 218 3 444 1248322 833 0.00024885 3.604063228LSBMD_CHRPOS_PVALUE_done.gz 1.00E-08 2456022 1.00E-06 1.00E-08 860 2 2 444 1248322 132 1.62E-05 4.791420261LDL_hg19_Pvalue 1.00E-08 2477527 1.00E-06 1.00E-08 805 42 2 444 1248322 253 0.000111458 3.952889144SCZ_hg19_Pvalue 1.00E-08 2425838 1.00E-06 1.00E-08 3438 64 2 444 1248322 649 0.001707793 2.767564771HBA1C_hg19_Pvalue 1.00E-08 2454111 1.00E-10 1.00E-20 52 0 1 444 1248322 25 3.76E-05 4.424410388BMI_hg19_Pvalue 1.00E-08 2478466 1.00E-10 1.00E-20 329 0 1 444 1248322 63 0.000242818 3.614719301HDL_hg19_Pvalue 1.00E-08 2477462 1.00E-10 1.00E-20 705 35 1 444 1248322 197 0.002325882 2.633412322DBP_hg19_Pvalue 1.00E-08 2449464 1.00E-08 1.00E-10 26 0 1 444 1248322 13 9.81E-06 5.008207717SBP_hg19_Pvalue 1.00E-08 2449464 1.00E-08 1.00E-10 83 0 1 444 1248322 13 9.81E-06 5.008207717BMI_hg19_Pvalue 1.00E-08 2478466 1.00E-08 1.00E-10 370 14 1 444 1248322 63 0.000242818 3.614719301UC_hg19_Pvalue 1.00E-08 1163678 1.00E-08 1.00E-10 223 52 1 444 1248322 81 0.000401127 3.39671778MAP_hg19_Pvalue 1.00E-08 2449223 1.00E-06 1.00E-08 166 3 1 444 1248322 41 0.000102481 3.989356222SBP_hg19_Pvalue 1.00E-08 2449464 1.00E-06 1.00E-08 109 1 1 444 1248322 48 0.000140742 3.851577516DBP_hg19_Pvalue 1.00E-08 2449464 1.00E-06 1.00E-08 313 2 1 444 1248322 55 0.000184979 3.732876634BMI_hg19_Pvalue 1.00E-08 2478466 1.00E-06 1.00E-08 641 15 1 444 1248322 150 0.001361244 2.866064021UC_hg19_Pvalue 1.00E-08 1163678 1.00E-06 1.00E-08 564 73 1 444 1248322 203 0.002466615 2.607898632IL6_hg19_Pvalue 1.00E-08 2464155 1.00E-04 1.00E-06 338 64 1 444 1248322 103 0.000646987 3.189104311HBA1C_hg19_Pvalue 1.00E-08 2454111 1.00E-04 1.00E-06 990 76 1 444 1248322 253 0.003790391 2.421315988ALZ_hg19_Pvalue 1.00E-08 2328879 1.00E-04 1.00E-06 1176 75 1 444 1248322 314 0.005760181 2.23956387MAP_hg19_Pvalue 1.00E-08 2449223 1.00E-04 1.00E-06 1422 33 1 444 1248322 324 0.006119194 2.213305778SBP_hg19_Pvalue 1.00E-08 2449464 1.00E-04 1.00E-06 1316 34 1 444 1248322 325 0.006155645 2.210726434TG_hg19_Pvalue 1.00E-08 2477564 1.00E-04 1.00E-06 2642 328 1 444 1248322 716 0.02732741 1.563401527HDL_hg19_Pvalue 1.00E-08 2477462 1.00E-04 1.00E-06 2660 139 1 444 1248322 721 0.02767869 1.557854468LDL_hg19_Pvalue 1.00E-08 2477527 1.00E-04 1.00E-06 2745 204 1 444 1248322 724 0.02789033 1.554546347