New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Feature request: Integrate QC Tools like FASTQC and Qualimap #7

Open

berntpopp opened this issue Jul 4, 2024 · 0 comments

Assignees

Labels

Member

berntpopp commented Jul 4, 2024

Feature request: Integrate QC Tools like FASTQC and Qualimap

Description:
Integrate quality control tools like FASTQC and Qualimap into the workflow to ensure data quality at various stages of the pipeline.

Acceptance Criteria:

Integrate FASTQC and Qualimap into the relevant steps of the workflow.
Ensure QC reports are generated for each relevant stage.
Update the documentation to include the usage of QC tools.

Implementation Steps:

Integrate FASTQC into the workflow to check the quality of input FASTQ files.
Integrate Qualimap to assess the quality of BAM files.
Ensure QC reports are generated and saved in the designated directory.
Test the workflow with sample data to ensure QC tools are working as expected.
Update the documentation with instructions on interpreting QC reports.

berntpopp added the enhancement label

berntpopp self-assigned this

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment