tests #807
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| # Regular tests | |
| # | |
| # Use this to ensure your tests are passing on every push and PR (skipped on | |
| # pushes which only affect documentation). | |
| # There is also a cron job set to run weekly on the default branch, to check | |
| # against dependency chain rot. | |
| # | |
| # You should make sure you run jobs on at least the *oldest* and the *newest* | |
| # versions of python that your codebase is intended to support. | |
| name: tests | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: "0 0 * * 1" | |
| branches: [ $default-branch ] | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.8", "3.10"] | |
| include: | |
| - os: windows-latest | |
| python-version: "3.8" | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python-version }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: System information | |
| run: python .github/workflows/system_info.py | |
| - name: Dynamically determine extra variables depending on Python version | |
| run: | | |
| echo "Running on Python $PYTHON" | |
| TEST_SIMA=$(python -c "import sys; print(sys.version_info[:2] <= (3, 6))") | |
| echo "TEST_SIMA = $TEST_SIMA" | |
| echo "test_sima=$TEST_SIMA" >> $GITHUB_ENV | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: echo "::set-output name=dir::$(pip cache dir)" | |
| - name: pip cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ runner.os }}-pip-py${{ matrix.python-version }}-${{ hashFiles('**/requirements*.txt') }} | |
| restore-keys: ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 | |
| python -m pip install --editable .[test] | |
| - name: Sanity check with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| python -m flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings | |
| python -m flake8 . --count --exit-zero --statistics | |
| - name: Debug environment | |
| run: python -m pip freeze | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest --timeout=180 --cov=fissa --cov-report term --cov-report xml --junitxml=testresults.xml | |
| - name: Upload unittest coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: Python ${{ matrix.python-version }} on ${{ runner.os }} | |
| - name: Delete current coverage files | |
| run: rm .coverage.* *.xml || echo "Continuing" | |
| - name: "Notebooks: Remove SIMA notebooks" | |
| if: ${{ env.test_sima != 'True' }} | |
| run: rm examples/*SIMA*; | |
| - name: "Notebooks: Install dependencies" | |
| run: | | |
| if [[ "${{ env.test_sima }}" == "True" ]]; then python -m pip install sima; fi; | |
| python -m pip install --editable .[plotting] | |
| - name: "Notebooks: Lint check" | |
| run: python -m pytest --timeout=180 --nbsmoke-lint ./examples/ | |
| - name: "Notebooks: Smoke test" | |
| run: python -m pytest --timeout=180 --nbsmoke-run ./examples/ --cov=fissa --cov-report term --cov-report xml --junitxml=nbsmoke.xml | |
| - name: "Notebooks: Upload coverage to Codecov" | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| flags: nbsmoke | |
| env_vars: OS,PYTHON | |
| name: Python ${{ matrix.python-version }} on ${{ runner.os }} | |
| - name: Build HTML docs | |
| run: | | |
| python -m pip install --editable .[docs] | |
| cd docs | |
| make html | |
| cd .. |