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Fixes handling of term freqs that are missing or zero #160

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merged 1 commit into from
Feb 2, 2021

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@hlapp hlapp commented Feb 2, 2021

The current database and API returns subsumer terms for which there is no count for certain corpora. Erroneously, the KB API currently returns a zero count for those, when it should return no count (phenoscape/phenoscape-kb-services#382). This change should handle both cases, and removes those subsumers from the calculation.

Fixes #153.

The current database and API returns subsumer terms for which there is
no count for certain corpora. Erroneously, the KB API currently returns
a zero count for those, when it should return no count. This change
should handle both cases, and removes those subsumers from the calculation.

Fixes #153.
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hlapp commented Feb 2, 2021

@johnbradley the failure in the release (R 4.x) check is due to phenoscape/phenoscape-kb-services#378. Due to random sub-sampling done in the test, whether the particular test fails or not depends on whether an affected term happens to be in the subsample.

@balhoff any idea on ETA for getting this fixed? This is highest priority right now.

@hlapp hlapp requested a review from johnbradley February 2, 2021 16:11
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LGTM

@hlapp hlapp merged commit 26d6eab into master Feb 2, 2021
@hlapp hlapp deleted the 153-fix-termfreq-handling branch February 2, 2021 20:33
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Semantic similarity tests fail
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