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Containerized and reproducible phenoscape backend build #15

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mjy opened this issue Dec 6, 2017 · 1 comment
Open

Containerized and reproducible phenoscape backend build #15

mjy opened this issue Dec 6, 2017 · 1 comment

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@mjy
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mjy commented Dec 6, 2017

Just throwing this out there to see where something like this might be at.

when I am building a new biodiversity data infrastructure
    then I want a data store that lets me persist semantic phenotypes
     and that store is "empty"
     and that store should be Docker-based (or alternative)
     and that store should be "trivially" deployable on Kubernetes
     and that store and its dependancies should be open source
     and as a bonus that store should have a minial API that lets me CRUD data
@hlapp
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hlapp commented Dec 6, 2017

Yes, I've been meaning to tackle this for a while, and as one possible target at the workshop, including as a basis for #10. More generally, it is currently very difficult to build the Phenoscape KB as a complete and functioning piece of infrastructure (from content ingest, to KB content build (including pre-reasoning, evolutionary branch profile construction, pre-computation of different semantic similarity metrics), to having working API and web-UI services in a reproducible manner. Having this would not only greatly lower the barrier to others instantiating their own KBs, but also greatly solidify our own infrastructure build.

@hlapp hlapp changed the title as a developer I want to use a containerized phenoscape backend Containerized and reproducible phenoscape backend build Dec 6, 2017
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