Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Display warning to user when k-mer length is below specific threshold #135

Open
glabbe opened this issue Jan 28, 2021 · 0 comments
Open
Labels

Comments

@glabbe
Copy link
Collaborator

glabbe commented Jan 28, 2021

There is currently no lower limit to k-mer length, and this could cause issues if the k-mer length is, say, below 6-10 bases, and the k-mer is found hundreds or thousands of times in a genome assembly. The user should be warned when the k-mer length is too short for the sequence to have specificity for a particular genome region.

@glabbe glabbe added the qc label Jan 28, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant