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setvars.py
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setvars.py
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#File: setvars.py
#Contact: [email protected]
#Purpose: Defines parameters for other scripts in this repo
#Defines:
# RUNDIR - directory you launch SCHISM from, containing cgem.nml and hgrid.gr3
# OUTPUTS - directory containing SCHISM netCDF outputs
# numfiles - number of files X for each GEN variable (GEN_1_X.nc)
# which_nodes - node location to do data extraction, nSCHISM_hgrid_node
# which_layers - layers to be extracted from each node, nSCHISM_vgrid_layers
# cgem_vars - Choose a subset of variables to extract
# iYr0 - Starting year of simulation (only used to name the files)
# debug - enables extra print statements in Python scripts
# Rdebug - enables extra print statments in R script
#imports
import os
#For any Python libraries in the current working directory (e.g., setvars.py)
SCRIPT_PATH = os.getcwd()
#--Run directory
#RUNDIR = "/expanse/lustre/scratch/llowe/temp_project/cgem-box"
#RUNDIR = "/expanse/lustre/scratch/llowe/temp_project/cnp-box"
RUNDIR = "/rsstu/users/l/lllowe/cgem/cnp-box"
#--Output directory
OUTPUTS = os.path.join(RUNDIR,'outputs')
#OUTPUTS = os.path.join(RUNDIR,'outputs_schism_sink')
#If outputs are not in the RUNDIR, set it here:
#OUTPUTS = /my/path/to/outputs
#--How many separate output chunks for each variable
#numfiles = 30
#numfiles = 28
numfiles = 1
#shiny_extract_all doesn't work if numfiles <2, in that case, use shiny_extract.py
#Nodes and layers are 0 (Zero) indexed in netCDF files
#--Nodes
##--Box model has 49 nodes, but they should all be the same
#which_nodes = [7,28,43]
#which_nodes = [7,28]
which_nodes = [10]
##--SABay has 10240 nodes, these are the ones Zhilong emailed me on 6.13.2023:
#which_nodes = [823,6000,492,1850,3083,78,2383,3329,4569,5779,5082,4465,6337,7193,8609,9743,2100,2421,2253]
#--Layers
##--Box model has 10 nz
which_layers = [1,2,3,4,5,6,7,8,9,10,11]
#which_layers = [1]
##--SABay has 15 layers
#which_layers = [1,4,9,14]
#--CGEM variables
##-all of them
cgem_vars = ['A','Qn','Qp','Z','NO3','NH4','PO4','DIC','O2','OM1CA','OM1NA','OM1PA','OM2CA','OM2NA','OM2PA','OM1CZ','OM1NZ','OM1PZ','OM2CZ','OM2NZ','OM2PZ','OM1R','OM2R','CDOM','Si','OM1BC','OM2BC','Alk','Tr']
#script skips extraction for variables not listed in cgem_vars.
##-smaller subset
#cgem_vars = ['A','Z','NO3','NH4','PO4','O2']
#--Start Year
##Toy year run starts from 2007
iYr0 = '2007'
##SABay starts 2019
#iYr0 = '2019'
#Debug Python scripts
debug = False
#False
#Debug R scripts
Rdebug = False