RosettaCommons

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38 repositories

privileged_residues
Public
Python
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Other
•4•1•0•19•Updated Dec 2, 2024Dec 2, 2024
pybind11
Public
Seamless operability between C++11 and Python
C++
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Other
•2.1k•8•0•4•Updated Nov 25, 2024Nov 25, 2024
rosetta
Public
The Rosetta Bio-macromolecule modeling package.
protein-structure protein-design enzyme-design macromolecular-modeling antibody-design
C++
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Other
•67•177•11•14•Updated Nov 12, 2024Nov 12, 2024
binder
Public
Binder, tool for automatic generation of Python bindings
bindings python
C++
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MIT License
•66•322•29•3•Updated Nov 6, 2024Nov 6, 2024
documentation
Public
Documentation for Rosetta Applications
PostScript
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Other
•2•4•3•15•Updated Nov 4, 2024Nov 4, 2024
protein_generator
Public
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
Python
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MIT License
•44•267•10•0•Updated Oct 28, 2024Oct 28, 2024
demos
Public
Demos of many Rosetta applications
Roff
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Other
•3•9•1•2•Updated Oct 2, 2024Oct 2, 2024
RFdiffusion
Public
Code for running RFdiffusion
Python
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Other
•353•1.8k•138•11•Updated Aug 26, 2024Aug 26, 2024
PyRosetta.notebooks
Public
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
jupyter-notebook dna rosetta rna-structure-prediction protein-design protein-folding protein-structure-prediction protein-docking google-colab pyrosetta
Jupyter Notebook
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MIT License
•151•497•20•6•Updated Aug 12, 2024Aug 12, 2024
rdkit
Public
The official sources for the RDKit library
HTML
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BSD 3-Clause "New" or "Revised" License
•881•3•0•1•Updated May 24, 2024May 24, 2024
tools
Public
Tools for parsing Rosetta source code and scripts for running specific Rosetta applications.
Python
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Other
•1•3•6•6•Updated May 1, 2024May 1, 2024
rosetta_clone_tools
Public
A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.
Shell
•26•24•0•1•Updated Mar 8, 2024Mar 8, 2024
pyrosetta_scripts
Public
A place in which scripts developed in PyRosetta can be stored and shared. In the not too distant future, these scripts will be tested along side the main repository to ensure that they continue to work even if we make changes to the interfaces of core classes.
Scala
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Other
•1•4•0•2•Updated Mar 7, 2024Mar 7, 2024
rosetta_scripts_scripts
Public
This is the repository where all developers writing protocols in XML should place all of their scripts
Roff
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Other
•0•4•1•1•Updated Mar 7, 2024Mar 7, 2024
scientific_benchmark_data
Public
various input data for scientific benchmark tests
Roff
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Other
•0•1•0•0•Updated Mar 7, 2024Mar 7, 2024
additional_protocol_data
Public
A repository for holding canonical inputs for Rosetta used by some (but not all) protocols; this is for data too big to go in main/database and that is not tightly coupled to the code in main/.
Roff
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Other
•1•0•0•0•Updated Mar 7, 2024Mar 7, 2024
pyrosetta_colab_setup
Public
Files for our auxiliary pyrosetta_colab_setup PyPI package
Python
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MIT License
•2•3•0•1•Updated Mar 7, 2024Mar 7, 2024
RoseTTAFold
Public
This package contains deep learning models and related scripts for RoseTTAFold
Python
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MIT License
•440•2k•84•7•Updated Feb 15, 2024Feb 15, 2024
bcl_rosetta
Public
A version of the Biochemical Library (BCL; https://github.com/BCLCommons/bcl) for integration with Rosetta.
C++
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MIT License
•20•2•0•0•Updated Feb 11, 2024Feb 11, 2024
AF2_peptide_hallucination
Public
Code for designing binders to flexible peptides with AlphaFold2 Hallucination
Python
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Other
•0•15•0•0•Updated Dec 21, 2023Dec 21, 2023
tensorflow_graphs
Public
trRosetta model binaries for using the trRosetta protocol within Rosetta proper
PureBasic
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MIT License
•3•2•0•1•Updated Jun 22, 2023Jun 22, 2023
bakerlab_dotfiles
Public
Configuration files the way we like 'em
Python
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Apache License 2.0
•6•3•0•0•Updated May 17, 2023May 17, 2023
RFDesign
Public
Protein hallucination and inpainting with RoseTTAFold
Python
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Other
•66•247•33•1•Updated Mar 30, 2023Mar 30, 2023
FvHallucinator
Public
Python
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Other
•5•25•1•0•Updated Dec 6, 2022Dec 6, 2022
DeepAb
Public
Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
Python
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Other
•28•148•8•2•Updated Nov 30, 2022Nov 30, 2022
pyrosetta_viewer3d
Public
Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab
Python
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MIT License
•3•8•5•0•Updated Oct 16, 2022Oct 16, 2022
Rosetta-DL
Public
A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
Other
•6•32•1•0•Updated Oct 12, 2022Oct 12, 2022
alphafold
Public
Open source code for AlphaFold.
Python
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Apache License 2.0
•2.3k•2•0•0•Updated Aug 3, 2022Aug 3, 2022
AutoRotLib
Public
Python
•3•0•0•0•Updated May 26, 2022May 26, 2022
jade2
Public
General repository for python modules and scripts to aid in the design, analysis, and modeling of biomolecules.
Python
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Other
•3•3•0•0•Updated Oct 21, 2021Oct 21, 2021