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    20 repositories

    • LASHiS

      Public
      Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI.
      Shell
      •
      GNU General Public License v2.0
      •4•2•0•0•Updated Feb 1, 2023Feb 1, 2023

    • caid

      Public archive
      CAI image processing pipeline containers for docker and singularity
      Shell
      •
      MIT License
      •0•1•0•0•Updated Jan 6, 2023Jan 6, 2023

    • transparent-singularity

      Public archive
      Deploying a singularity container so that it behaves like one would have installed software natively
      Shell
      •
      MIT License
      •4•4•0•0•Updated Dec 7, 2022Dec 7, 2022

    • CAIsr.github.io

      Public
      Describing our tools and imaging workflows
      CSS
      •4•1•0•0•Updated Nov 30, 2022Nov 30, 2022

    • qsm

      Public
      This docker and singularity image bundles the tgv-qsm algorithm with bet2, dcm2niix and provides a complete QSM processing pipeline.
      Shell
      •6•9•0•0•Updated Mar 10, 2022Mar 10, 2022

    • uniQC

      Public
      Unified NeuroImaging Quality Control (uniQC) toolbox
      MATLAB
      •4•12•0•0•Updated Jan 10, 2022Jan 10, 2022

    • volgenmodel-nipype

      Public
      volgenmodel-nipype is the port of volgenmodel to nipype. It creates nonlinear models from a series of input MINC files.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•0•0•Updated Sep 9, 2021Sep 9, 2021

    • dicom2cloud

      Public archive
      This repository is for https://www.healthhack.com.au/ 2017
      Python
      •
      BSD 2-Clause "Simplified" License
      •3•0•4•0•Updated Jun 1, 2021Jun 1, 2021

    • niftyreg

      Public
      Mirror of https://cmiclab.cs.ucl.ac.uk/mmodat/niftyreg
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 12, 2021Mar 12, 2021

    • coreg_sim

      Public
      Simulation code to test the impact of data and alogrithms on coregistration accuracy.
      Python
      •1•0•0•0•Updated Dec 11, 2018Dec 11, 2018

    • optimizing_exercise

      Public
      Optimising exercise repository for Docker/Singularity images
      dockersingularity
      Shell
      •0•0•0•0•Updated Jul 27, 2018Jul 27, 2018

    • cma

      Public
      Python
      •2•0•0•0•Updated Mar 22, 2018Mar 22, 2018

    • scripts

      Public
      This repository is a collection of scripts that might be useful
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 6, 2017Jul 6, 2017

    • qbatch

      Public
      A simple unified interface to gridengine and PBS
      Perl
      •3•0•0•0•Updated Jul 5, 2017Jul 5, 2017

    • sHRF

      Public
      sHRF
      MATLAB
      •
      Other
      •1•0•0•0•Updated Feb 27, 2017Feb 27, 2017

    • volgenmodel

      Public
      volgenmodel creates nonlinear models from a series of input MINC files - modelling was originally created as part of the ANDI project funded by DCRC
      Perl
      •
      Other
      •1•0•0•0•Updated Jun 12, 2016Jun 12, 2016

    • minc-widgets

      Public
      Collection of MINC widgets, perl and shell scripts
      Perl
      •4•0•0•0•Updated Apr 26, 2016Apr 26, 2016

    • volgenmodel-fast-example

      Public
      Mouse brain data for testing volgenmodel-nipype
      Shell
      •2•0•0•0•Updated Feb 28, 2016Feb 28, 2016

    • DigitalControl

      Public
      (MAC) Camera Remote Control Application developed @ Centre for Advanced Imaging [University of Queensland]
      Objective-C
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 16, 2013Dec 16, 2013

    • DigitalControlServer

      Public
      Digital Control Server is a server which aim to control camera remotely by using a socket communication.
      C
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 25, 2013Nov 25, 2013