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Add a DataTranslator for NeuronConnect.xls data #345

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mwatts15 opened this issue May 29, 2018 · 3 comments
Open

Add a DataTranslator for NeuronConnect.xls data #345

mwatts15 opened this issue May 29, 2018 · 3 comments

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@mwatts15
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mwatts15 commented May 29, 2018

Write a translator for NeuronConnect.xls and to the PyOpenWorm.data_trans package.

See other DataTranslator types in PyOpenWorm.data_trans.

The translator should read the XLS file, generate PyOpenWorm.connection.Connection objects, and produce a DataWithEvidenceDataSource.

derived from #25

@slarson
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slarson commented Jun 1, 2018

@mwatts15 There is still desire from the community to use the original NeuronConnect.xls data set because of differing perspectives on the methodologies used to assemble them.

So I would say that data is not redundant.

Relatedly, it may be helpful to be able to select which dataset to use as a switch between multiple choices.

@slarson slarson closed this as completed Jun 1, 2018
@mwatts15 mwatts15 reopened this Jun 1, 2018
@mwatts15 mwatts15 added ready and removed ready labels Jun 1, 2018
@mwatts15 mwatts15 changed the title Determine if NeuronConnect.xls data is redundant Add a translator for NeuronConnect.xls data Jun 1, 2018
@mwatts15
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mwatts15 commented Jun 1, 2018

@slarson thank you for the attention to this issue. I tried to capture that the data may not be redundant in the issue summary.

@BioComSoftware
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@mwatts15 @slarson
Can someone elaborate on the start position for this, and then functional end goals? I've found the PyOpenWorm repository, and see both files.

@mwatts15 mwatts15 changed the title Add a translator for NeuronConnect.xls data Add a DataTranslator for NeuronConnect.xls data Mar 20, 2019
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