bug in writeSBML line 496

[maziya]

defaultSboTerm is not defined in line 496 of writeSBML function. It should be set as defaultSboTerm = 176

I hereby confirm that I have:

• Tried to solve the issue on my own
• Retried to run my code with the latest version of The COBRA Toolbox
• [ X] Checked that a similar issue has not already been opened

(Note: You may replace [ ] with [X] to check the box)

[rmtfleming]

Fork, fix, PR.

…

On Mon, 5 Jun 2023 at 11:33, maziya ***@***.***> wrote: defaultSboTerm is not defined in line 496 of writeSBML function. It should be set as defaultSboTerm = 176 *I hereby confirm that I have:* - Tried to solve the issue on my own - Retried to run my code with the latest version of The COBRA Toolbox - [ X] Checked that a similar issue has not already been opened *(Note: You may replace [ ] with [X] to check the box)* — Reply to this email directly, view it on GitHub <#2122>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAQMEOWPL5XS44MLLHSJLVDXJWYXJANCNFSM6AAAAAAY2YVDU4> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

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[tpfau]

Which version of the toolbox are you running?
Line 496 of writeSBML has to do with confidence scores, (and been so for quite some time). Also for reactions the defaultRxnSboTerm is set to 176 in line 481, so I'm not sure what you are referring to.

[maziya]

Which version of the toolbox are you running? Line 496 of writeSBML has to do with confidence scores, (and been so for quite some time). Also for reactions the defaultRxnSboTerm is set to 176 in line 481, so I'm not sure what you are referring to.

My apologies. I have now updated the toolbox.