Update schedule, artifacts, and bibliography #12
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| name: Update schedule, artifacts, and bibliography | |
| on: | |
| schedule: | |
| # We'll run this weekly | |
| - cron: '0 12 * * 1' | |
| workflow_dispatch: | |
| jobs: | |
| update-schedule-artifacts: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/[email protected] | |
| with: | |
| # channels: conda-forge,defaults | |
| # channel-priority: true | |
| activate-environment: ols-website | |
| environment-file: environment.yml | |
| - shell: bash -el {0} | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| - name: Update Open Seeds schedule | |
| shell: bash -el {0} | |
| run: | | |
| bash bin/openseeds/update_schedule.sh | |
| - name: Update Open Seeds library | |
| shell: bash -el {0} | |
| run: | | |
| python bin/prepare_website_data.py buildlibrary -p "openseeds" | |
| - name: Update Nebula schedule | |
| shell: bash -el {0} | |
| run: | | |
| bash bin/nebula/update_schedule.sh | |
| - name: Update people data artifacts | |
| shell: bash -el {0} | |
| run: | | |
| python bin/prepare_website_data.py extractfullpeopledata | |
| - name: Update Open Seeds library artifacts | |
| shell: bash -el {0} | |
| run: | | |
| python bin/prepare_website_data.py extractlibrary -p "openseeds" | |
| - name: Update Open Seeds projects | |
| shell: bash -el {0} | |
| run: | | |
| python bin/prepare_website_data.py createprojecttable -p "openseeds" | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v7 | |
| with: | |
| commit-message: Update schedule and artifacts | |
| title: Automatic schedule & artifact update | |
| body: Automatic schedule update and artifacts done via GitHub Action once a week | |
| base: main | |
| branch: schedule-update | |
| delete-branch: true | |
| update-bibliography: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/[email protected] | |
| with: | |
| # channels: conda-forge,defaults | |
| # channel-priority: true | |
| activate-environment: ols-website | |
| environment-file: environment.yml | |
| - shell: bash -el {0} | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| - name: Update bibliography | |
| shell: bash -el {0} | |
| env: | |
| ZOTERO_API: ${{ secrets.ZoteroAPI }} | |
| run: | | |
| python bin/prepare_website_data.py updatebibliography -a "$ZOTERO_API" | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v7 | |
| with: | |
| commit-message: Update bibliography | |
| title: Automatic bibliography update | |
| body: Automatic bibliography update done via GitHub Action once a week | |
| base: main | |
| branch: bibliography-update | |
| delete-branch: true |