From 5b006f5af53983b4f2e03564a429c7e3e496accb Mon Sep 17 00:00:00 2001 From: Aleix Puig <94959119+aleixpuigb@users.noreply.github.com> Date: Fri, 22 Nov 2024 14:45:19 +0000 Subject: [PATCH 1/2] Addresses part of #3414 NTR antimesosalpinx (#3420) Addresses part of #3414 NTR antimesosalpinx --- src/ontology/uberon-edit.obo | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 1484f4c4a..f1ef9ce66 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -224685,6 +224685,20 @@ relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain property_value: dcterms-date "2024-08-28T16:10:50Z" xsd:dateTime +[Term] +id: UBERON:8600117 +name: antimesosalpinx +def: "A posterior free border of a mesosalpinx." [https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html] +synonym: "anti-mesosalpinx" EXACT [doi:10.1101/2020.08.23.263772] +synonym: "posterior free border of mesosalpinx" EXACT [https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html] +synonym: "posterior free edge of mesosalpinx" EXACT [https://orcid.org/0000-0001-7655-4833] +is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0002095 ! mesentery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé +relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus +relationship: part_of UBERON:0012331 ! mesosalpinx +property_value: dcterms-date "2024-11-14T09:59:53Z" xsd:dateTime + [Term] id: UBERON:8700000 name: aorta-gonad-mesonephros From 28cc337be8647700d6e47f855ec2c57dd63e504b Mon Sep 17 00:00:00 2001 From: Aleix Puig <94959119+aleixpuigb@users.noreply.github.com> Date: Mon, 25 Nov 2024 10:24:21 +0000 Subject: [PATCH 2/2] Refresh external resources in preparation of Uberon release (#3433) --- src/mappings/fbbt.sssom.tsv | 713 ++++--- src/ontology/bridge/cl-bridge-to-caro.owl | 2 +- src/ontology/bridge/cl-bridge-to-ehdaa2.owl | 2 +- src/ontology/bridge/cl-bridge-to-emapa.owl | 2 +- src/ontology/bridge/cl-bridge-to-fbbt.owl | 2 +- src/ontology/bridge/cl-bridge-to-fma.owl | 2 +- src/ontology/bridge/cl-bridge-to-go.owl | 2 +- src/ontology/bridge/cl-bridge-to-kupo.owl | 2 +- src/ontology/bridge/cl-bridge-to-ma.owl | 2 +- src/ontology/bridge/cl-bridge-to-ncit.owl | 2 +- src/ontology/bridge/cl-bridge-to-sctid.owl | 2 +- src/ontology/bridge/cl-bridge-to-wbbt.owl | 2 +- src/ontology/bridge/cl-bridge-to-xao.owl | 2 +- src/ontology/bridge/cl-bridge-to-zfa.owl | 2 +- src/ontology/bridge/uberon-bridge-to-aeo.owl | 2 +- src/ontology/bridge/uberon-bridge-to-bfo.owl | 2 +- src/ontology/bridge/uberon-bridge-to-caro.owl | 2 +- src/ontology/bridge/uberon-bridge-to-dhba.owl | 2 +- .../bridge/uberon-bridge-to-ehdaa2.owl | 2 +- .../bridge/uberon-bridge-to-emapa.owl | 2 +- src/ontology/bridge/uberon-bridge-to-fbbt.owl | 2 +- src/ontology/bridge/uberon-bridge-to-fbdv.owl | 2 +- src/ontology/bridge/uberon-bridge-to-fma.owl | 2 +- src/ontology/bridge/uberon-bridge-to-go.owl | 2 +- src/ontology/bridge/uberon-bridge-to-hao.owl | 2 +- src/ontology/bridge/uberon-bridge-to-hba.owl | 2 +- .../bridge/uberon-bridge-to-hsapdv.owl | 2 +- src/ontology/bridge/uberon-bridge-to-kupo.owl | 2 +- src/ontology/bridge/uberon-bridge-to-ma.owl | 2 +- .../bridge/uberon-bridge-to-mmusdv.owl | 2 +- src/ontology/bridge/uberon-bridge-to-ncit.owl | 2 +- src/ontology/bridge/uberon-bridge-to-oges.owl | 2 +- src/ontology/bridge/uberon-bridge-to-pba.owl | 2 +- .../bridge/uberon-bridge-to-sctid.owl | 2 +- src/ontology/bridge/uberon-bridge-to-spd.owl | 2 +- src/ontology/bridge/uberon-bridge-to-tads.owl | 2 +- src/ontology/bridge/uberon-bridge-to-tgma.owl | 2 +- src/ontology/bridge/uberon-bridge-to-wbbt.owl | 2 +- src/ontology/bridge/uberon-bridge-to-wbls.owl | 2 +- src/ontology/bridge/uberon-bridge-to-xao.owl | 2 +- src/ontology/bridge/uberon-bridge-to-zfa.owl | 2 +- src/ontology/bridge/uberon-bridge-to-zfs.owl | 2 +- src/ontology/imports/merged_import.owl | 1802 ++--------------- 43 files changed, 611 insertions(+), 1986 deletions(-) diff --git a/src/mappings/fbbt.sssom.tsv b/src/mappings/fbbt.sssom.tsv index 8babe4648..32f505ef2 100644 --- a/src/mappings/fbbt.sssom.tsv +++ b/src/mappings/fbbt.sssom.tsv @@ -12,360 +12,359 @@ #subject_source: obo:fbbt.owl #object_source: obo:uberon.owl #mapping_date: 2024-07-12 -subject_id subject_label predicate_id object_id mapping_justification comment -FBbt:00000001 organism semapv:crossSpeciesExactMatch UBERON:0000468 semapv:ManualMappingCuration -FBbt:00000002 tagma semapv:crossSpeciesExactMatch UBERON:6000002 semapv:ManualMappingCuration -FBbt:00000003 segment semapv:crossSpeciesExactMatch UBERON:0000914 semapv:ManualMappingCuration -FBbt:00000004 head semapv:crossSpeciesExactMatch UBERON:6000004 semapv:ManualMappingCuration Somewhat redundant with ‘insect {adult/larval} head’ -FBbt:00000005 ocular segment semapv:crossSpeciesExactMatch UBERON:6000005 semapv:ManualMappingCuration -FBbt:00000006 head segment semapv:crossSpeciesExactMatch UBERON:6000006 semapv:ManualMappingCuration -FBbt:00000007 procephalic segment semapv:crossSpeciesExactMatch UBERON:6000007 semapv:ManualMappingCuration Uberon term should probably be named ‘insect procephalic segment’? -FBbt:00000008 labral segment semapv:crossSpeciesExactMatch UBERON:6000008 semapv:ManualMappingCuration Uberon term should probably be named ‘insect labral segment’? -FBbt:00000009 antennal segment semapv:crossSpeciesExactMatch UBERON:6000009 semapv:ManualMappingCuration -FBbt:00000011 gnathal segment semapv:crossSpeciesExactMatch UBERON:6000011 semapv:ManualMappingCuration -FBbt:00000014 labial segment semapv:crossSpeciesExactMatch UBERON:6000014 semapv:ManualMappingCuration -FBbt:00000015 thorax semapv:crossSpeciesExactMatch UBERON:6000015 semapv:ManualMappingCuration -FBbt:00000016 thoracic segment semapv:crossSpeciesExactMatch UBERON:6000016 semapv:ManualMappingCuration -FBbt:00000017 prothoracic segment semapv:crossSpeciesExactMatch UBERON:6000017 semapv:ManualMappingCuration -FBbt:00000018 mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6000018 semapv:ManualMappingCuration -FBbt:00000019 metathoracic segment semapv:crossSpeciesExactMatch UBERON:6000019 semapv:ManualMappingCuration -FBbt:00000020 abdomen semapv:crossSpeciesExactMatch UBERON:6000020 semapv:ManualMappingCuration -FBbt:00000021 abdominal segment semapv:crossSpeciesExactMatch UBERON:6000021 semapv:ManualMappingCuration -FBbt:00000029 abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6000029 semapv:ManualMappingCuration Why does Uberon only have terms for segments 8 and 9? -FBbt:00000030 abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6000030 semapv:ManualMappingCuration Likewise -FBbt:00000038 chorion semapv:crossSpeciesExactMatch UBERON:0000920 semapv:ManualMappingCuration -FBbt:00000042 vitelline membrane semapv:crossSpeciesExactMatch UBERON:0003125 semapv:ManualMappingCuration -FBbt:00000046 dorsal appendage semapv:crossSpeciesExactMatch UBERON:6000046 semapv:ManualMappingCuration -FBbt:00000052 embryo semapv:crossSpeciesExactMatch UBERON:0000922 semapv:ManualMappingCuration -FBbt:00000093 ventral midline of embryo semapv:crossSpeciesExactMatch UBERON:0009571 semapv:ManualMappingCuration -FBbt:00000095 amnioserosa semapv:crossSpeciesExactMatch UBERON:0010302 semapv:ManualMappingCuration Uberon term commented as “may be obsoleted once added to the insect ontology” -FBbt:00000096 ventral furrow semapv:crossSpeciesExactMatch UBERON:6000096 semapv:ManualMappingCuration -FBbt:00000097 cephalic furrow semapv:crossSpeciesExactMatch UBERON:6000097 semapv:ManualMappingCuration -FBbt:00000104 mesoderm anlage semapv:crossSpeciesExactMatch UBERON:6000104 semapv:ManualMappingCuration -FBbt:00000110 germ layer semapv:crossSpeciesExactMatch UBERON:0000923 semapv:ManualMappingCuration -FBbt:00000111 ectoderm semapv:crossSpeciesExactMatch UBERON:0000924 semapv:ManualMappingCuration -FBbt:00000112 dorsal ectoderm semapv:crossSpeciesExactMatch UBERON:6000112 semapv:ManualMappingCuration -FBbt:00000119 anterior ectoderm semapv:crossSpeciesExactMatch UBERON:6000119 semapv:ManualMappingCuration -FBbt:00000123 amnioproctodeal invagination semapv:crossSpeciesExactMatch UBERON:0000931 semapv:ManualMappingCuration -FBbt:00000125 endoderm semapv:crossSpeciesExactMatch UBERON:0000925 semapv:ManualMappingCuration -FBbt:00000126 mesoderm semapv:crossSpeciesExactMatch UBERON:0000926 semapv:ManualMappingCuration -FBbt:00000128 trunk mesoderm semapv:crossSpeciesExactMatch UBERON:6000128 semapv:ManualMappingCuration -FBbt:00000130 visceral mesoderm semapv:crossSpeciesExactMatch UBERON:6000130 semapv:ManualMappingCuration -FBbt:00000136 mesectoderm semapv:crossSpeciesExactMatch UBERON:0000927 semapv:ManualMappingCuration -FBbt:00000137 embryonic tagma semapv:crossSpeciesExactMatch UBERON:6000137 semapv:ManualMappingCuration -FBbt:00000154 embryonic segment semapv:crossSpeciesExactMatch UBERON:6000154 semapv:ManualMappingCuration -FBbt:00000155 embryonic head semapv:crossSpeciesExactMatch UBERON:0008816 semapv:ManualMappingCuration -FBbt:00000157 embryonic head segment semapv:crossSpeciesExactMatch UBERON:6000157 semapv:ManualMappingCuration -FBbt:00000158 embryonic procephalic segment semapv:crossSpeciesExactMatch UBERON:6000158 semapv:ManualMappingCuration -FBbt:00000160 embryonic antennal segment semapv:crossSpeciesExactMatch UBERON:6000160 semapv:ManualMappingCuration -FBbt:00000162 embryonic gnathal segment semapv:crossSpeciesExactMatch UBERON:6000162 semapv:ManualMappingCuration -FBbt:00000165 embryonic labial segment semapv:crossSpeciesExactMatch UBERON:6000165 semapv:ManualMappingCuration -FBbt:00000166 embryonic thorax semapv:crossSpeciesExactMatch UBERON:6000166 semapv:ManualMappingCuration -FBbt:00000167 embryonic thoracic segment semapv:crossSpeciesExactMatch UBERON:6000167 semapv:ManualMappingCuration -FBbt:00000168 embryonic prothoracic segment semapv:crossSpeciesExactMatch UBERON:6000168 semapv:ManualMappingCuration -FBbt:00000169 embryonic mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6000169 semapv:ManualMappingCuration -FBbt:00000170 embryonic metathoracic segment semapv:crossSpeciesExactMatch UBERON:6000170 semapv:ManualMappingCuration -FBbt:00000171 embryonic abdomen semapv:crossSpeciesExactMatch UBERON:6000171 semapv:ManualMappingCuration -FBbt:00000172 embryonic abdominal segment semapv:crossSpeciesExactMatch UBERON:6000172 semapv:ManualMappingCuration -FBbt:00000180 embryonic abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6000180 semapv:ManualMappingCuration -FBbt:00000181 embryonic abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6000181 semapv:ManualMappingCuration -FBbt:00000186 embryonic optic lobe primordium semapv:crossSpeciesExactMatch UBERON:6000186 semapv:ManualMappingCuration -FBbt:00000439 stomodeum semapv:crossSpeciesExactMatch UBERON:0000930 semapv:ManualMappingCuration -FBbt:00001055 presumptive embryonic/larval nervous system semapv:crossSpeciesExactMatch UBERON:6001055 semapv:ManualMappingCuration -FBbt:00001056 presumptive embryonic/larval central nervous system semapv:crossSpeciesExactMatch UBERON:6001056 semapv:ManualMappingCuration -FBbt:00001057 neurogenic region semapv:crossSpeciesExactMatch UBERON:0002346 semapv:ManualMappingCuration -FBbt:00001059 visual primordium semapv:crossSpeciesExactMatch UBERON:6001059 semapv:ManualMappingCuration -FBbt:00001060 embryonic brain semapv:crossSpeciesExactMatch UBERON:6001060 semapv:ManualMappingCuration -FBbt:00001135 proneural cluster semapv:crossSpeciesExactMatch UBERON:6001135 semapv:ManualMappingCuration -FBbt:00001648 embryonic imaginal tissue semapv:crossSpeciesExactMatch UBERON:6001648 semapv:ManualMappingCuration -FBbt:00001649 imaginal disc primordium semapv:crossSpeciesExactMatch UBERON:6001649 semapv:ManualMappingCuration -FBbt:00001650 labial disc primordium semapv:crossSpeciesExactMatch UBERON:6001650 semapv:ManualMappingCuration -FBbt:00001652 eye-antennal disc primordium semapv:crossSpeciesExactMatch UBERON:6001652 semapv:ManualMappingCuration -FBbt:00001653 dorsal thoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001653 semapv:ManualMappingCuration -FBbt:00001655 dorsal mesothoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001655 semapv:ManualMappingCuration -FBbt:00001656 dorsal metathoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001656 semapv:ManualMappingCuration -FBbt:00001657 ventral thoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001657 semapv:ManualMappingCuration -FBbt:00001658 ventral prothoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001658 semapv:ManualMappingCuration -FBbt:00001661 genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001661 semapv:ManualMappingCuration -FBbt:00001662 male genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001662 semapv:ManualMappingCuration -FBbt:00001663 female genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001663 semapv:ManualMappingCuration -FBbt:00001664 embryonic/larval circulatory system semapv:crossSpeciesExactMatch UBERON:6001664 semapv:ManualMappingCuration -FBbt:00001668 embryonic/larval lymph gland semapv:crossSpeciesExactMatch UBERON:6001668 semapv:ManualMappingCuration -FBbt:00001718 retrocerebral complex semapv:crossSpeciesExactMatch UBERON:0012325 semapv:ManualMappingCuration Uberon term commented as “will be ceded to arthropod anatomy ontology” -FBbt:00001722 ring gland semapv:crossSpeciesExactMatch UBERON:6001722 semapv:ManualMappingCuration -FBbt:00001727 larva semapv:crossSpeciesExactMatch UBERON:0002548 semapv:ManualMappingCuration -FBbt:00001728 larval tagma semapv:crossSpeciesExactMatch UBERON:6001728 semapv:ManualMappingCuration -FBbt:00001729 larval segment semapv:crossSpeciesExactMatch UBERON:6001729 semapv:ManualMappingCuration -FBbt:00001730 larval head semapv:crossSpeciesExactMatch UBERON:6001730 semapv:ManualMappingCuration -FBbt:00001731 larval ocular segment semapv:crossSpeciesExactMatch UBERON:6001731 semapv:ManualMappingCuration -FBbt:00001732 larval head segment semapv:crossSpeciesExactMatch UBERON:6001732 semapv:ManualMappingCuration -FBbt:00001733 larval procephalic segment semapv:crossSpeciesExactMatch UBERON:6001733 semapv:ManualMappingCuration -FBbt:00001734 larval labral segment semapv:crossSpeciesExactMatch UBERON:6001734 semapv:ManualMappingCuration -FBbt:00001735 larval antennal segment semapv:crossSpeciesExactMatch UBERON:6001735 semapv:ManualMappingCuration -FBbt:00001737 larval gnathal segment semapv:crossSpeciesExactMatch UBERON:6001737 semapv:ManualMappingCuration -FBbt:00001740 larval labial segment semapv:crossSpeciesExactMatch UBERON:6001740 semapv:ManualMappingCuration -FBbt:00001741 larval thorax semapv:crossSpeciesExactMatch UBERON:6001741 semapv:ManualMappingCuration -FBbt:00001742 larval thoracic segment semapv:crossSpeciesExactMatch UBERON:6001742 semapv:ManualMappingCuration -FBbt:00001743 larval prothoracic segment semapv:crossSpeciesExactMatch UBERON:6001743 semapv:ManualMappingCuration -FBbt:00001744 larval mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6001744 semapv:ManualMappingCuration -FBbt:00001745 larval metathoracic segment semapv:crossSpeciesExactMatch UBERON:6001745 semapv:ManualMappingCuration -FBbt:00001746 larval abdomen semapv:crossSpeciesExactMatch UBERON:6001746 semapv:ManualMappingCuration -FBbt:00001747 larval abdominal segment semapv:crossSpeciesExactMatch UBERON:6001747 semapv:ManualMappingCuration -FBbt:00001755 larval abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6001755 semapv:ManualMappingCuration -FBbt:00001756 larval abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6001756 semapv:ManualMappingCuration -FBbt:00001760 larval imaginal tissue semapv:crossSpeciesExactMatch UBERON:6001760 semapv:ManualMappingCuration -FBbt:00001761 imaginal disc semapv:crossSpeciesExactMatch UBERON:0000939 semapv:ManualMappingCuration -FBbt:00001764 labial disc semapv:crossSpeciesExactMatch UBERON:6001764 semapv:ManualMappingCuration -FBbt:00001765 clypeo-labral disc semapv:crossSpeciesExactMatch UBERON:6001765 semapv:ManualMappingCuration -FBbt:00001766 eye-antennal disc semapv:crossSpeciesExactMatch UBERON:6001766 semapv:ManualMappingCuration -FBbt:00001767 antennal disc semapv:crossSpeciesExactMatch UBERON:6001767 semapv:ManualMappingCuration -FBbt:00001776 dorsal thoracic disc semapv:crossSpeciesExactMatch UBERON:6001776 semapv:ManualMappingCuration -FBbt:00001778 wing disc semapv:crossSpeciesExactMatch UBERON:6001778 semapv:ManualMappingCuration -FBbt:00001779 haltere disc semapv:crossSpeciesExactMatch UBERON:6001779 semapv:ManualMappingCuration -FBbt:00001780 ventral thoracic disc semapv:crossSpeciesExactMatch UBERON:6001780 semapv:ManualMappingCuration -FBbt:00001781 prothoracic leg disc semapv:crossSpeciesExactMatch UBERON:6001781 semapv:ManualMappingCuration -FBbt:00001784 genital disc semapv:crossSpeciesExactMatch UBERON:6001784 semapv:ManualMappingCuration -FBbt:00001785 male genital disc semapv:crossSpeciesExactMatch UBERON:6001785 semapv:ManualMappingCuration -FBbt:00001787 female genital disc semapv:crossSpeciesExactMatch UBERON:6001787 semapv:ManualMappingCuration -FBbt:00001790 histoblast nest semapv:crossSpeciesExactMatch UBERON:6001790 semapv:ManualMappingCuration -FBbt:00001842 embryonic/larval digestive system semapv:crossSpeciesExactMatch UBERON:6001842 semapv:ManualMappingCuration -FBbt:00001845 cephalopharyngeal skeleton semapv:crossSpeciesExactMatch UBERON:6001845 semapv:ManualMappingCuration -FBbt:00001848 epipharyngeal sclerite semapv:crossSpeciesExactMatch UBERON:6001848 semapv:ManualMappingCuration -FBbt:00001911 embryonic/larval nervous system semapv:crossSpeciesExactMatch UBERON:6001911 semapv:ManualMappingCuration -FBbt:00001919 embryonic/larval central nervous system semapv:crossSpeciesExactMatch UBERON:6001919 semapv:ManualMappingCuration -FBbt:00001920 embryonic/larval brain semapv:crossSpeciesExactMatch UBERON:6001920 semapv:ManualMappingCuration -FBbt:00001925 embryonic/larval protocerebrum semapv:crossSpeciesExactMatch UBERON:6001925 semapv:ManualMappingCuration -FBbt:00001956 optic nerve semapv:crossSpeciesExactMatch UBERON:0004904 semapv:ManualMappingCuration -FBbt:00002639 embryonic/larval sense organ semapv:crossSpeciesExactMatch UBERON:6002639 semapv:ManualMappingCuration -FBbt:00002642 embryonic/larval ocular segment sensillum semapv:crossSpeciesExactMatch UBERON:6002642 semapv:ManualMappingCuration -FBbt:00002952 prepupa semapv:crossSpeciesExactMatch UBERON:0003142 semapv:ManualMappingCuration -FBbt:00002953 pupa semapv:crossSpeciesExactMatch UBERON:0003143 semapv:ManualMappingCuration -FBbt:00003004 adult semapv:crossSpeciesExactMatch UBERON:0007023 semapv:ManualMappingCuration -FBbt:00003005 adult tagma semapv:crossSpeciesExactMatch UBERON:6003005 semapv:ManualMappingCuration -FBbt:00003006 adult segment semapv:crossSpeciesExactMatch UBERON:6003006 semapv:ManualMappingCuration -FBbt:00003007 adult head semapv:crossSpeciesExactMatch UBERON:6003007 semapv:ManualMappingCuration -FBbt:00003009 adult head segment semapv:crossSpeciesExactMatch UBERON:6003009 semapv:ManualMappingCuration -FBbt:00003010 adult procephalic segment semapv:crossSpeciesExactMatch UBERON:6003010 semapv:ManualMappingCuration -FBbt:00003011 adult labral segment semapv:crossSpeciesExactMatch UBERON:6003011 semapv:ManualMappingCuration -FBbt:00003012 adult antennal segment semapv:crossSpeciesExactMatch UBERON:6003012 semapv:ManualMappingCuration -FBbt:00003018 adult thorax semapv:crossSpeciesExactMatch UBERON:6003018 semapv:ManualMappingCuration -FBbt:00003019 adult thoracic segment semapv:crossSpeciesExactMatch UBERON:6003019 semapv:ManualMappingCuration -FBbt:00003020 adult prothoracic segment semapv:crossSpeciesExactMatch UBERON:6003020 semapv:ManualMappingCuration -FBbt:00003021 adult mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6003021 semapv:ManualMappingCuration -FBbt:00003023 adult abdomen semapv:crossSpeciesExactMatch UBERON:6003023 semapv:ManualMappingCuration -FBbt:00003024 adult abdominal segment semapv:crossSpeciesExactMatch UBERON:6003024 semapv:ManualMappingCuration -FBbt:00003039 adult dorsal trunk semapv:crossSpeciesExactMatch UBERON:6003039 semapv:ManualMappingCuration -FBbt:00003125 alimentary canal semapv:crossSpeciesExactMatch UBERON:0001555 semapv:ManualMappingCuration -FBbt:00003126 adult mouth semapv:crossSpeciesExactMatch UBERON:0000165 semapv:ManualMappingCuration -FBbt:00003154 adult heart semapv:crossSpeciesExactMatch UBERON:0015230 semapv:ManualMappingCuration FBbt is missing a stage-neutral ‘heart’ -FBbt:00003259 adult somatic muscle semapv:crossSpeciesExactMatch UBERON:6003259 semapv:ManualMappingCuration -FBbt:00003559 adult nervous system semapv:crossSpeciesExactMatch UBERON:6003559 semapv:ManualMappingCuration -FBbt:00003623 adult central nervous system semapv:crossSpeciesExactMatch UBERON:6003623 semapv:ManualMappingCuration -FBbt:00003624 adult brain semapv:crossSpeciesExactMatch UBERON:6003624 semapv:ManualMappingCuration -FBbt:00003626 supraesophageal ganglion semapv:crossSpeciesExactMatch UBERON:6003626 semapv:ManualMappingCuration -FBbt:00003627 protocerebrum semapv:crossSpeciesExactMatch UBERON:6003627 semapv:ManualMappingCuration -FBbt:00003632 adult central complex semapv:crossSpeciesExactMatch UBERON:6003632 semapv:ManualMappingCuration -FBbt:00003701 adult optic lobe semapv:crossSpeciesExactMatch UBERON:0006795 semapv:ManualMappingCuration -FBbt:00004114 head sensillum semapv:crossSpeciesExactMatch UBERON:0000963 semapv:ManualMappingCuration -FBbt:00004199 lens semapv:crossSpeciesExactMatch UBERON:0000207 semapv:ManualMappingCuration -FBbt:00004200 retina semapv:crossSpeciesExactMatch UBERON:0005388 semapv:ManualMappingCuration -FBbt:00004208 developing embryonic structure semapv:crossSpeciesExactMatch UBERON:0002050 semapv:ManualMappingCuration -FBbt:00004296 sex comb semapv:crossSpeciesExactMatch UBERON:6004296 semapv:ManualMappingCuration -FBbt:00004340 wing hair semapv:crossSpeciesExactMatch UBERON:6004340 semapv:ManualMappingCuration -FBbt:00004475 sclerite semapv:crossSpeciesExactMatch UBERON:6004475 semapv:ManualMappingCuration -FBbt:00004476 tergite semapv:crossSpeciesExactMatch UBERON:6004476 semapv:ManualMappingCuration -FBbt:00004477 sternite semapv:crossSpeciesExactMatch UBERON:6004477 semapv:ManualMappingCuration -FBbt:00004481 adult external head semapv:crossSpeciesExactMatch UBERON:6004481 semapv:ManualMappingCuration -FBbt:00004482 head capsule semapv:crossSpeciesExactMatch UBERON:0003153 semapv:ManualMappingCuration -FBbt:00004492 occiput semapv:crossSpeciesExactMatch UBERON:0003155 semapv:ManualMappingCuration Uberon term commented as “belonging to another ontology but kept for disambiguation purposes” -FBbt:00004505 ocellus semapv:crossSpeciesExactMatch UBERON:0003161 semapv:ManualMappingCuration -FBbt:00004506 lateral ocellus semapv:crossSpeciesExactMatch UBERON:0003162 semapv:ManualMappingCuration -FBbt:00004507 medial ocellus semapv:crossSpeciesExactMatch UBERON:0003211 semapv:ManualMappingCuration Uberon term should be under ‘dorsal ocellus’ (UBERON:0003161) -FBbt:00004508 eye semapv:crossSpeciesExactMatch UBERON:0000018 semapv:ManualMappingCuration -FBbt:00004510 ommatidium semapv:crossSpeciesExactMatch UBERON:0000971 semapv:ManualMappingCuration -FBbt:00004511 antenna semapv:crossSpeciesExactMatch UBERON:0000972 semapv:ManualMappingCuration -FBbt:00004519 arista semapv:crossSpeciesExactMatch UBERON:6004519 semapv:ManualMappingCuration -FBbt:00004520 mouthpart semapv:crossSpeciesExactMatch UBERON:6004520 semapv:ManualMappingCuration -FBbt:00004521 clypeus semapv:crossSpeciesExactMatch UBERON:6004521 semapv:ManualMappingCuration -FBbt:00004522 labrum semapv:crossSpeciesExactMatch UBERON:0005905 semapv:ManualMappingCuration Uberon term has “insect labium” as EXACT synonym while “labium” is a different part in FBbt -FBbt:00004535 proboscis semapv:crossSpeciesExactMatch UBERON:6004535 semapv:ManualMappingCuration -FBbt:00004540 rostrum semapv:crossSpeciesExactMatch UBERON:6004540 semapv:ManualMappingCuration -FBbt:00004551 adult external thorax semapv:crossSpeciesExactMatch UBERON:6004551 semapv:ManualMappingCuration -FBbt:00004552 tergum semapv:crossSpeciesExactMatch UBERON:6004552 semapv:ManualMappingCuration -FBbt:00004557 sternum semapv:crossSpeciesExactMatch UBERON:0003130 semapv:ManualMappingCuration -FBbt:00004578 adult external mesothorax semapv:crossSpeciesExactMatch UBERON:6004578 semapv:ManualMappingCuration -FBbt:00004580 mesothoracic tergum semapv:crossSpeciesExactMatch UBERON:6004580 semapv:ManualMappingCuration -FBbt:00004640 leg semapv:crossSpeciesExactMatch UBERON:0005895 semapv:ManualMappingCuration -FBbt:00004642 tibia semapv:crossSpeciesExactMatch UBERON:0003131 semapv:ManualMappingCuration -FBbt:00004646 tarsal segment semapv:crossSpeciesExactMatch UBERON:6004646 semapv:ManualMappingCuration -FBbt:00004648 metatarsus semapv:crossSpeciesExactMatch UBERON:6004648 semapv:ManualMappingCuration -FBbt:00004663 prothoracic leg semapv:crossSpeciesExactMatch UBERON:6004663 semapv:ManualMappingCuration -FBbt:00004668 prothoracic tarsal segment semapv:crossSpeciesExactMatch UBERON:6004668 semapv:ManualMappingCuration -FBbt:00004670 prothoracic metatarsus semapv:crossSpeciesExactMatch UBERON:6004670 semapv:ManualMappingCuration -FBbt:00004729 wing semapv:crossSpeciesExactMatch UBERON:0000984 semapv:ManualMappingCuration -FBbt:00004751 wing vein semapv:crossSpeciesExactMatch UBERON:0003194 semapv:ManualMappingCuration -FBbt:00004783 haltere semapv:crossSpeciesExactMatch UBERON:0000987 semapv:ManualMappingCuration -FBbt:00004788 adult external abdomen semapv:crossSpeciesExactMatch UBERON:6004788 semapv:ManualMappingCuration -FBbt:00004823 analia semapv:crossSpeciesExactMatch UBERON:6004823 semapv:ManualMappingCuration -FBbt:00004824 female analia semapv:crossSpeciesExactMatch UBERON:6004824 semapv:ManualMappingCuration -FBbt:00004825 male analia semapv:crossSpeciesExactMatch UBERON:6004825 semapv:ManualMappingCuration -FBbt:00004850 phallus semapv:crossSpeciesExactMatch UBERON:0008811 semapv:ManualMappingCuration -FBbt:00004856 organ system semapv:crossSpeciesExactMatch UBERON:0000467 semapv:ManualMappingCuration -FBbt:00004857 reproductive system semapv:crossSpeciesExactMatch UBERON:0000990 semapv:ManualMappingCuration -FBbt:00004864 female reproductive system semapv:crossSpeciesExactMatch UBERON:0000474 semapv:ManualMappingCuration -FBbt:00004865 ovary semapv:crossSpeciesExactMatch UBERON:0000992 semapv:ManualMappingCuration -FBbt:00004894 egg chamber semapv:crossSpeciesExactMatch UBERON:0003199 semapv:ManualMappingCuration -FBbt:00004921 spermathecum semapv:crossSpeciesExactMatch UBERON:0000994 semapv:ManualMappingCuration -FBbt:00004924 uterus semapv:crossSpeciesCloseMatch UBERON:0006834 semapv:ManualMappingCuration Debatable: The fly uterus is the site of egg fertilisation, not of embryo development (oviposition happens quickly after fertilization, so not a lot of developpment occurs while the egg is still in the uterus) -FBbt:00004927 male reproductive system semapv:crossSpeciesExactMatch UBERON:0000079 semapv:ManualMappingCuration -FBbt:00004928 testis semapv:crossSpeciesExactMatch UBERON:0000473 semapv:ManualMappingCuration -FBbt:00004958 seminal vesicle semapv:crossSpeciesExactMatch UBERON:0006868 semapv:ManualMappingCuration -FBbt:00004969 integumentary system semapv:crossSpeciesExactMatch UBERON:0002416 semapv:ManualMappingCuration -FBbt:00004970 cuticle semapv:crossSpeciesExactMatch UBERON:0001001 semapv:ManualMappingCuration -FBbt:00004973 exocuticle semapv:crossSpeciesExactMatch UBERON:0003201 semapv:ManualMappingCuration -FBbt:00004974 endocuticle semapv:crossSpeciesExactMatch UBERON:0003202 semapv:ManualMappingCuration Conflicting definition (inner layer in Uberon; middle layer in FBbt) -FBbt:00004979 trichome semapv:crossSpeciesExactMatch UBERON:6004979 semapv:ManualMappingCuration -FBbt:00004983 embryonic/larval cuticle semapv:crossSpeciesExactMatch UBERON:6004983 semapv:ManualMappingCuration -FBbt:00004986 third instar larval cuticle semapv:crossSpeciesExactMatch UBERON:6004986 semapv:ManualMappingCuration -FBbt:00004987 puparium cuticle semapv:crossSpeciesExactMatch UBERON:0018656 semapv:ManualMappingCuration -FBbt:00004993 epidermis semapv:crossSpeciesExactMatch UBERON:0007376 semapv:ManualMappingCuration -FBbt:00005023 imaginal precursor semapv:crossSpeciesExactMatch UBERON:6005023 semapv:ManualMappingCuration -FBbt:00005024 tracheal system semapv:crossSpeciesExactMatch UBERON:0005155 semapv:ManualMappingCuration -FBbt:00005036 tracheal pit semapv:crossSpeciesExactMatch UBERON:6005036 semapv:ManualMappingCuration -FBbt:00005037 tracheal primordium semapv:crossSpeciesExactMatch UBERON:6005037 semapv:ManualMappingCuration -FBbt:00005043 trachea semapv:crossSpeciesExactMatch UBERON:6005043 semapv:ManualMappingCuration -FBbt:00005054 spiracle semapv:crossSpeciesExactMatch UBERON:6005054 semapv:ManualMappingCuration -FBbt:00005055 digestive system semapv:crossSpeciesExactMatch UBERON:0001007 semapv:ManualMappingCuration -FBbt:00005056 excretory system semapv:crossSpeciesExactMatch UBERON:0001008 semapv:ManualMappingCuration -FBbt:00005057 circulatory system semapv:crossSpeciesExactMatch UBERON:0009054 semapv:ManualMappingCuration -FBbt:00005060 hemocoel semapv:crossSpeciesExactMatch UBERON:0002323 semapv:ManualMappingCuration -FBbt:00005061 hemolymph semapv:crossSpeciesExactMatch UBERON:0001011 semapv:ManualMappingCuration -FBbt:00005066 fat body semapv:crossSpeciesExactMatch UBERON:0003917 semapv:ManualMappingCuration Uberon definition makes it a single gland localized dorsally to the gut; FBbt definition makes it distributed throughout the body; and not sure it's correct to define it as a gland -FBbt:00005068 endocrine system semapv:crossSpeciesExactMatch UBERON:0000949 semapv:ManualMappingCuration -FBbt:00005093 nervous system semapv:crossSpeciesExactMatch UBERON:0001016 semapv:ManualMappingCuration -FBbt:00005094 central nervous system semapv:crossSpeciesExactMatch UBERON:0001017 semapv:ManualMappingCuration -FBbt:00005095 brain semapv:crossSpeciesExactMatch UBERON:0000955 semapv:ManualMappingCuration -FBbt:00005096 stomatogastric nervous system semapv:crossSpeciesExactMatch UBERON:6005096 semapv:ManualMappingCuration -FBbt:00005097 ventral nerve cord semapv:crossSpeciesExactMatch UBERON:0000934 semapv:ManualMappingCuration -FBbt:00005098 peripheral nervous system semapv:crossSpeciesExactMatch UBERON:0000010 semapv:ManualMappingCuration -FBbt:00005099 neuron projection bundle semapv:crossSpeciesExactMatch UBERON:0000122 semapv:ManualMappingCuration -FBbt:00005100 tract semapv:crossSpeciesExactMatch UBERON:0001018 semapv:ManualMappingCuration -FBbt:00005105 nerve semapv:crossSpeciesExactMatch UBERON:0001021 semapv:ManualMappingCuration -FBbt:00005136 sensory nerve semapv:crossSpeciesExactMatch UBERON:0001027 semapv:ManualMappingCuration -FBbt:00005139 neuropil semapv:crossSpeciesExactMatch UBERON:0002606 semapv:ManualMappingCuration -FBbt:00005155 sense organ semapv:crossSpeciesExactMatch UBERON:0000020 semapv:ManualMappingCuration -FBbt:00005157 chemosensory sensory organ semapv:crossSpeciesExactMatch UBERON:0000005 semapv:ManualMappingCuration -FBbt:00005158 olfactory sensory organ semapv:crossSpeciesExactMatch UBERON:0002268 semapv:ManualMappingCuration -FBbt:00005159 gustatory sensory organ semapv:crossSpeciesExactMatch UBERON:0003212 semapv:ManualMappingCuration -FBbt:00005162 photoreceptor semapv:crossSpeciesExactMatch UBERON:0000970 semapv:ManualMappingCuration -FBbt:00005168 external sensory organ semapv:crossSpeciesExactMatch UBERON:6005168 semapv:ManualMappingCuration -FBbt:00005177 chaeta semapv:crossSpeciesExactMatch UBERON:6005177 semapv:ManualMappingCuration -FBbt:00005215 chordotonal organ semapv:crossSpeciesExactMatch UBERON:0001038 semapv:ManualMappingCuration -FBbt:00005317 gastrula embryo semapv:crossSpeciesExactMatch UBERON:0004734 semapv:ManualMappingCuration marked as deprecated in FBbt (but without suggested replacement) -FBbt:00005333 late embryo semapv:crossSpeciesExactMatch UBERON:0000323 semapv:ManualMappingCuration -FBbt:00005338 second instar larva semapv:crossSpeciesExactMatch UBERON:0018382 semapv:ManualMappingCuration marked as deprecated in FBbt (but without suggested replacement) -FBbt:00005378 wing margin semapv:crossSpeciesExactMatch UBERON:6005378 semapv:ManualMappingCuration -FBbt:00005379 foregut semapv:crossSpeciesExactMatch UBERON:0001041 semapv:ManualMappingCuration -FBbt:00005380 pharynx semapv:crossSpeciesExactMatch UBERON:6005380 semapv:ManualMappingCuration -FBbt:00005382 salivary gland semapv:crossSpeciesExactMatch UBERON:0001044 semapv:ManualMappingCuration -FBbt:00005383 midgut semapv:crossSpeciesExactMatch UBERON:0001045 semapv:ManualMappingCuration -FBbt:00005384 hindgut semapv:crossSpeciesExactMatch UBERON:0001046 semapv:ManualMappingCuration -FBbt:00005386 glomerulus semapv:crossSpeciesExactMatch UBERON:0001047 semapv:ManualMappingCuration -FBbt:00005393 embryonic/larval integumentary system semapv:crossSpeciesExactMatch UBERON:6005393 semapv:ManualMappingCuration -FBbt:00005396 adult integumentary system semapv:crossSpeciesExactMatch UBERON:6005396 semapv:ManualMappingCuration -FBbt:00005426 anlage semapv:crossSpeciesExactMatch UBERON:0007688 semapv:ManualMappingCuration -FBbt:00005427 ectoderm anlage semapv:crossSpeciesExactMatch UBERON:6005427 semapv:ManualMappingCuration -FBbt:00005461 circulatory system primordium semapv:crossSpeciesExactMatch UBERON:6005461 semapv:ManualMappingCuration -FBbt:00005467 lymph gland primordium semapv:crossSpeciesExactMatch UBERON:6005467 semapv:ManualMappingCuration -FBbt:00005495 primordium semapv:crossSpeciesExactMatch UBERON:0001048 semapv:ManualMappingCuration -FBbt:00005514 clypeo-labral disc primordium semapv:crossSpeciesExactMatch UBERON:6005514 semapv:ManualMappingCuration -FBbt:00005526 dorsal epidermis primordium semapv:crossSpeciesExactMatch UBERON:6005526 semapv:ManualMappingCuration -FBbt:00005533 ventral epidermis primordium semapv:crossSpeciesExactMatch UBERON:6005533 semapv:ManualMappingCuration -FBbt:00005538 clypeo-labral primordium semapv:crossSpeciesExactMatch UBERON:6005538 semapv:ManualMappingCuration -FBbt:00005558 ventral ectoderm semapv:crossSpeciesExactMatch UBERON:6005558 semapv:ManualMappingCuration -FBbt:00005569 presumptive embryonic/larval tracheal system semapv:crossSpeciesExactMatch UBERON:6005569 semapv:ManualMappingCuration -FBbt:00005756 rectum semapv:crossSpeciesExactMatch UBERON:0006866 semapv:ManualMappingCuration -FBbt:00005757 neurohemal organ semapv:crossSpeciesExactMatch UBERON:0001053 semapv:ManualMappingCuration -FBbt:00005786 Malpighian tubule semapv:crossSpeciesExactMatch UBERON:0001054 semapv:ManualMappingCuration -FBbt:00005799 corpus cardiacum semapv:crossSpeciesExactMatch UBERON:0001056 semapv:ManualMappingCuration -FBbt:00005800 corpus allatum semapv:crossSpeciesExactMatch UBERON:0001057 semapv:ManualMappingCuration -FBbt:00005801 mushroom body semapv:crossSpeciesExactMatch UBERON:0001058 semapv:ManualMappingCuration -FBbt:00005802 pars intercerebralis semapv:crossSpeciesExactMatch UBERON:0001059 semapv:ManualMappingCuration -FBbt:00005805 Bolwig organ semapv:crossSpeciesExactMatch UBERON:6005805 semapv:ManualMappingCuration -FBbt:00005811 articulation semapv:crossSpeciesExactMatch UBERON:0004905 semapv:ManualMappingCuration -FBbt:00005830 Bolwig organ primordium semapv:crossSpeciesExactMatch UBERON:6005830 semapv:ManualMappingCuration -FBbt:00005831 dorsal imaginal tissue semapv:crossSpeciesExactMatch UBERON:6005831 semapv:ManualMappingCuration -FBbt:00005835 extraembryonic structure semapv:crossSpeciesExactMatch UBERON:0000478 semapv:ManualMappingCuration -FBbt:00005913 arista lateral semapv:crossSpeciesExactMatch UBERON:6005913 semapv:ManualMappingCuration -FBbt:00006011 pharate adult semapv:crossSpeciesExactMatch UBERON:6006011 semapv:ManualMappingCuration -FBbt:00006032 mesothoracic tergum primordium semapv:crossSpeciesExactMatch UBERON:6006032 semapv:ManualMappingCuration -FBbt:00007000 appendage semapv:crossSpeciesExactMatch UBERON:0000026 semapv:ManualMappingCuration -FBbt:00007001 anatomical structure semapv:crossSpeciesExactMatch UBERON:0000061 semapv:ManualMappingCuration -FBbt:00007003 portion of tissue semapv:crossSpeciesExactMatch UBERON:0000479 semapv:ManualMappingCuration -FBbt:00007004 male organism semapv:crossSpeciesExactMatch UBERON:0003101 semapv:ManualMappingCuration -FBbt:00007005 epithelium semapv:crossSpeciesExactMatch UBERON:0000483 semapv:ManualMappingCuration -FBbt:00007006 developing material anatomical entity semapv:crossSpeciesExactMatch UBERON:0005423 semapv:ManualMappingCuration -FBbt:00007009 organism subdivision semapv:crossSpeciesExactMatch UBERON:0000475 semapv:ManualMappingCuration -FBbt:00007010 multi-tissue structure semapv:crossSpeciesExactMatch UBERON:0000481 semapv:ManualMappingCuration -FBbt:00007011 female organism semapv:crossSpeciesExactMatch UBERON:0003100 semapv:ManualMappingCuration -FBbt:00007013 acellular anatomical structure semapv:crossSpeciesExactMatch UBERON:0000476 semapv:ManualMappingCuration -FBbt:00007015 immaterial anatomical entity semapv:crossSpeciesExactMatch UBERON:0000466 semapv:ManualMappingCuration -FBbt:00007016 material anatomical entity semapv:crossSpeciesExactMatch UBERON:0000465 semapv:ManualMappingCuration -FBbt:00007017 anatomical space semapv:crossSpeciesExactMatch UBERON:0000464 semapv:ManualMappingCuration -FBbt:00007018 appendage segment semapv:crossSpeciesExactMatch UBERON:0010758 semapv:ManualMappingCuration -FBbt:00007019 portion of organism substance semapv:crossSpeciesExactMatch UBERON:0000463 semapv:ManualMappingCuration -FBbt:00007020 metatarsus of male prothoracic leg semapv:crossSpeciesExactMatch UBERON:6007020 semapv:ManualMappingCuration -FBbt:00007027 cuboidal/columnar epithelium semapv:crossSpeciesExactMatch UBERON:0000485 semapv:ManualMappingCuration -FBbt:00007045 trunk ectoderm semapv:crossSpeciesExactMatch UBERON:6007045 semapv:ManualMappingCuration -FBbt:00007060 multi-cell-component structure semapv:crossSpeciesExactMatch UBERON:0005162 semapv:ManualMappingCuration -FBbt:00007070 embryonic/larval posterior inferior protocerebrum semapv:crossSpeciesExactMatch UBERON:6007070 semapv:ManualMappingCuration -FBbt:00007091 subperineurial glial sheath semapv:crossSpeciesCloseMatch UBERON:0000202 semapv:ManualMappingCuration Debatable: the subperineurial glia does act “like” a BBB but is it enough to make the two terms equivalent? -FBbt:00007116 presumptive embryonic/larval system semapv:crossSpeciesExactMatch UBERON:6007116 semapv:ManualMappingCuration -FBbt:00007145 adult protocerebrum semapv:crossSpeciesExactMatch UBERON:6007145 semapv:ManualMappingCuration -FBbt:00007149 segment of antenna semapv:crossSpeciesExactMatch UBERON:6007149 semapv:ManualMappingCuration -FBbt:00007150 segment of leg semapv:crossSpeciesExactMatch UBERON:6007150 semapv:ManualMappingCuration -FBbt:00007152 sensillum semapv:crossSpeciesExactMatch UBERON:0002536 semapv:ManualMappingCuration -FBbt:00007229 cell cluster organ semapv:crossSpeciesExactMatch UBERON:0010001 semapv:ManualMappingCuration -FBbt:00007230 compound cell cluster organ semapv:crossSpeciesExactMatch UBERON:0014732 semapv:ManualMappingCuration -FBbt:00007231 external sensillum semapv:crossSpeciesExactMatch UBERON:6007231 semapv:ManualMappingCuration -FBbt:00007232 eo-type sensillum semapv:crossSpeciesExactMatch UBERON:6007232 semapv:ManualMappingCuration -FBbt:00007233 internal sensillum semapv:crossSpeciesExactMatch UBERON:6007233 semapv:ManualMappingCuration -FBbt:00007240 embryonic/larval sensillum semapv:crossSpeciesExactMatch UBERON:6007240 semapv:ManualMappingCuration -FBbt:00007242 embryonic/larval head sensillum semapv:crossSpeciesExactMatch UBERON:6007242 semapv:ManualMappingCuration -FBbt:00007245 cuticular specialization semapv:crossSpeciesExactMatch UBERON:6007245 semapv:ManualMappingCuration -FBbt:00007248 chorionic specialization semapv:crossSpeciesExactMatch UBERON:6007248 semapv:ManualMappingCuration -FBbt:00007276 anatomical group semapv:crossSpeciesExactMatch UBERON:0034923 semapv:ManualMappingCuration -FBbt:00007277 anatomical cluster semapv:crossSpeciesExactMatch UBERON:0000477 semapv:ManualMappingCuration -FBbt:00007278 non-connected functional system semapv:crossSpeciesExactMatch UBERON:0015203 semapv:ManualMappingCuration -FBbt:00007280 embryonic/larval head sense organ semapv:crossSpeciesExactMatch UBERON:6007280 semapv:ManualMappingCuration -FBbt:00007284 region of integument semapv:crossSpeciesExactMatch UBERON:6007284 semapv:ManualMappingCuration -FBbt:00007285 segmental subdivision of integument semapv:crossSpeciesExactMatch UBERON:6007285 semapv:ManualMappingCuration -FBbt:00007288 integumentary specialization semapv:crossSpeciesExactMatch UBERON:6007288 semapv:ManualMappingCuration -FBbt:00007289 tagmatic subdivision of integument semapv:crossSpeciesExactMatch UBERON:6007289 semapv:ManualMappingCuration -FBbt:00007330 organ system subdivision semapv:crossSpeciesExactMatch UBERON:0011216 semapv:ManualMappingCuration -FBbt:00007331 segmental subdivision of organ system semapv:crossSpeciesExactMatch UBERON:6007331 semapv:ManualMappingCuration -FBbt:00007373 internal sense organ semapv:crossSpeciesExactMatch UBERON:6007373 semapv:ManualMappingCuration -FBbt:00007410 tracheal lumen semapv:crossSpeciesExactMatch UBERON:0006832 semapv:ManualMappingCuration -FBbt:00007424 epithelial furrow semapv:crossSpeciesExactMatch UBERON:6007424 semapv:ManualMappingCuration -FBbt:00007474 epithelial tube semapv:crossSpeciesExactMatch UBERON:0003914 semapv:ManualMappingCuration -FBbt:00007692 sensory system semapv:crossSpeciesExactMatch UBERON:0001032 semapv:ManualMappingCuration -FBbt:00016022 abdominal histoblast primordium semapv:crossSpeciesExactMatch UBERON:6016022 semapv:ManualMappingCuration -FBbt:00040003 non-connected developing system semapv:crossSpeciesExactMatch UBERON:6040003 semapv:ManualMappingCuration -FBbt:00040005 synaptic neuropil semapv:crossSpeciesExactMatch UBERON:6040005 semapv:ManualMappingCuration -FBbt:00040007 synaptic neuropil domain semapv:crossSpeciesExactMatch UBERON:6040007 semapv:ManualMappingCuration -FBbt:00041000 synaptic neuropil block semapv:crossSpeciesExactMatch UBERON:6041000 semapv:ManualMappingCuration -FBbt:00047153 anus semapv:crossSpeciesExactMatch UBERON:0001245 semapv:ManualMappingCuration -FBbt:00047166 gut epithelium semapv:crossSpeciesExactMatch UBERON:0003929 semapv:ManualMappingCuration -FBbt:00057001 anterior-posterior subdivision of organism semapv:crossSpeciesExactMatch UBERON:6057001 semapv:ManualMappingCuration -FBbt:00058291 dorsal vessel semapv:crossSpeciesExactMatch UBERON:0015231 semapv:ManualMappingCuration -FBbt:00100152 row semapv:crossSpeciesExactMatch UBERON:0034926 semapv:ManualMappingCuration -FBbt:00100153 sensillum row semapv:crossSpeciesExactMatch UBERON:6100153 semapv:ManualMappingCuration -FBbt:00100313 multicellular structure semapv:crossSpeciesExactMatch UBERON:0010000 semapv:ManualMappingCuration -FBbt:00100314 duct semapv:crossSpeciesExactMatch UBERON:0000058 semapv:ManualMappingCuration -FBbt:00100315 gut section semapv:crossSpeciesExactMatch UBERON:0004921 semapv:ManualMappingCuration -FBbt:00100316 diverticulum of gut semapv:crossSpeciesExactMatch UBERON:0009854 semapv:ManualMappingCuration -FBbt:00100317 gland semapv:crossSpeciesExactMatch UBERON:0002530 semapv:ManualMappingCuration -FBbt:00110636 adult cerebral ganglion semapv:crossSpeciesExactMatch UBERON:6110636 semapv:ManualMappingCuration -FBbt:00110746 presumptive prothoracic metatarsus semapv:crossSpeciesExactMatch UBERON:6110746 semapv:ManualMappingCuration -FBbt:00110811 presumptive arista semapv:crossSpeciesExactMatch UBERON:6110811 semapv:ManualMappingCuration -FBbt:10000000 anatomical entity semapv:crossSpeciesExactMatch UBERON:0001062 semapv:ManualMappingCuration +subject_id subject_label predicate_id object_id object_label mapping_justification comment +FBbt:00000001 organism semapv:crossSpeciesExactMatch UBERON:0000468 multicellular organism semapv:ManualMappingCuration +FBbt:00000002 tagma semapv:crossSpeciesExactMatch UBERON:6000002 arthropod tagma semapv:ManualMappingCuration +FBbt:00000003 segment semapv:crossSpeciesExactMatch UBERON:0000914 organismal segment semapv:ManualMappingCuration +FBbt:00000004 head semapv:crossSpeciesExactMatch UBERON:6000004 panarthropod head semapv:ManualMappingCuration Somewhat redundant with ‘insect {adult/larval} head’ +FBbt:00000005 ocular segment semapv:crossSpeciesExactMatch UBERON:6000005 insect ocular segment semapv:ManualMappingCuration +FBbt:00000006 head segment semapv:crossSpeciesExactMatch UBERON:6000006 insect head segment semapv:ManualMappingCuration +FBbt:00000007 procephalic segment semapv:crossSpeciesExactMatch UBERON:6000007 procephalic segment semapv:ManualMappingCuration Uberon term should probably be named ‘insect procephalic segment’? +FBbt:00000008 labral segment semapv:crossSpeciesExactMatch UBERON:6000008 labral segment semapv:ManualMappingCuration Uberon term should probably be named ‘insect labral segment’? +FBbt:00000009 antennal segment semapv:crossSpeciesExactMatch UBERON:6000009 antennal segment semapv:ManualMappingCuration +FBbt:00000011 gnathal segment semapv:crossSpeciesExactMatch UBERON:6000011 insect gnathal segment semapv:ManualMappingCuration +FBbt:00000014 labial segment semapv:crossSpeciesExactMatch UBERON:6000014 insect labial segment semapv:ManualMappingCuration +FBbt:00000015 thorax semapv:crossSpeciesExactMatch UBERON:6000015 insect thorax semapv:ManualMappingCuration +FBbt:00000016 thoracic segment semapv:crossSpeciesExactMatch UBERON:6000016 insect thoracic segment semapv:ManualMappingCuration +FBbt:00000017 prothoracic segment semapv:crossSpeciesExactMatch UBERON:6000017 insect prothoracic segment semapv:ManualMappingCuration +FBbt:00000018 mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6000018 insect mesothoracic segment semapv:ManualMappingCuration +FBbt:00000019 metathoracic segment semapv:crossSpeciesExactMatch UBERON:6000019 insect metathoracic segment semapv:ManualMappingCuration +FBbt:00000020 abdomen semapv:crossSpeciesExactMatch UBERON:6000020 insect abdomen semapv:ManualMappingCuration +FBbt:00000021 abdominal segment semapv:crossSpeciesExactMatch UBERON:6000021 insect abdominal segment semapv:ManualMappingCuration +FBbt:00000029 abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6000029 insect abdominal segment 8 semapv:ManualMappingCuration Why does Uberon only have terms for segments 8 and 9? +FBbt:00000030 abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6000030 insect abdominal segment 9 semapv:ManualMappingCuration Likewise +FBbt:00000038 chorion semapv:crossSpeciesExactMatch UBERON:0000920 egg chorion semapv:ManualMappingCuration +FBbt:00000042 vitelline membrane semapv:crossSpeciesExactMatch UBERON:0003125 vitelline membrane semapv:ManualMappingCuration +FBbt:00000046 dorsal appendage semapv:crossSpeciesExactMatch UBERON:6000046 insect dorsal appendage semapv:ManualMappingCuration +FBbt:00000052 embryo semapv:crossSpeciesExactMatch UBERON:0000922 embryo semapv:ManualMappingCuration +FBbt:00000093 ventral midline of embryo semapv:crossSpeciesExactMatch UBERON:0009571 ventral midline semapv:ManualMappingCuration +FBbt:00000095 amnioserosa semapv:crossSpeciesExactMatch UBERON:0010302 amnioserosa semapv:ManualMappingCuration Uberon term commented as “may be obsoleted once added to the insect ontology” +FBbt:00000096 ventral furrow semapv:crossSpeciesExactMatch UBERON:6000096 insect ventral furrow semapv:ManualMappingCuration +FBbt:00000097 cephalic furrow semapv:crossSpeciesExactMatch UBERON:6000097 insect cephalic furrow semapv:ManualMappingCuration +FBbt:00000104 mesoderm anlage semapv:crossSpeciesExactMatch UBERON:6000104 insect mesoderm anlage semapv:ManualMappingCuration +FBbt:00000110 germ layer semapv:crossSpeciesExactMatch UBERON:0000923 germ layer semapv:ManualMappingCuration +FBbt:00000111 ectoderm semapv:crossSpeciesExactMatch UBERON:0000924 ectoderm semapv:ManualMappingCuration +FBbt:00000112 dorsal ectoderm semapv:crossSpeciesExactMatch UBERON:6000112 insect dorsal ectoderm semapv:ManualMappingCuration +FBbt:00000119 anterior ectoderm semapv:crossSpeciesExactMatch UBERON:6000119 insect anterior ectoderm semapv:ManualMappingCuration +FBbt:00000123 amnioproctodeal invagination semapv:crossSpeciesExactMatch UBERON:0000931 proctodeum semapv:ManualMappingCuration +FBbt:00000125 endoderm semapv:crossSpeciesExactMatch UBERON:0000925 endoderm semapv:ManualMappingCuration +FBbt:00000126 mesoderm semapv:crossSpeciesExactMatch UBERON:0000926 mesoderm semapv:ManualMappingCuration +FBbt:00000128 trunk mesoderm semapv:crossSpeciesExactMatch UBERON:6000128 insect trunk mesoderm semapv:ManualMappingCuration +FBbt:00000130 visceral mesoderm semapv:crossSpeciesExactMatch UBERON:6000130 insect visceral mesoderm semapv:ManualMappingCuration +FBbt:00000136 mesectoderm semapv:crossSpeciesExactMatch UBERON:0000927 mesectoderm semapv:ManualMappingCuration +FBbt:00000137 embryonic tagma semapv:crossSpeciesExactMatch UBERON:6000137 embryonic tagma semapv:ManualMappingCuration +FBbt:00000154 embryonic segment semapv:crossSpeciesExactMatch UBERON:6000154 insect embryonic segment semapv:ManualMappingCuration +FBbt:00000155 embryonic head semapv:crossSpeciesExactMatch UBERON:0008816 embryonic head semapv:ManualMappingCuration +FBbt:00000157 embryonic head segment semapv:crossSpeciesExactMatch UBERON:6000157 insect embryonic head segment semapv:ManualMappingCuration +FBbt:00000158 embryonic procephalic segment semapv:crossSpeciesExactMatch UBERON:6000158 insect embryonic procephalic segment semapv:ManualMappingCuration +FBbt:00000160 embryonic antennal segment semapv:crossSpeciesExactMatch UBERON:6000160 insect embryonic antennal segment semapv:ManualMappingCuration +FBbt:00000162 embryonic gnathal segment semapv:crossSpeciesExactMatch UBERON:6000162 insect embryonic gnathal segment semapv:ManualMappingCuration +FBbt:00000165 embryonic labial segment semapv:crossSpeciesExactMatch UBERON:6000165 insect embryonic labial segment semapv:ManualMappingCuration +FBbt:00000166 embryonic thorax semapv:crossSpeciesExactMatch UBERON:6000166 insect embryonic thorax semapv:ManualMappingCuration +FBbt:00000167 embryonic thoracic segment semapv:crossSpeciesExactMatch UBERON:6000167 insect embryonic thoracic segment semapv:ManualMappingCuration +FBbt:00000168 embryonic prothoracic segment semapv:crossSpeciesExactMatch UBERON:6000168 insect embryonic prothoracic segment semapv:ManualMappingCuration +FBbt:00000169 embryonic mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6000169 insect embryonic mesothoracic segment semapv:ManualMappingCuration +FBbt:00000170 embryonic metathoracic segment semapv:crossSpeciesExactMatch UBERON:6000170 insect embryonic metathoracic segment semapv:ManualMappingCuration +FBbt:00000171 embryonic abdomen semapv:crossSpeciesExactMatch UBERON:6000171 insect embryonic abdomen semapv:ManualMappingCuration +FBbt:00000172 embryonic abdominal segment semapv:crossSpeciesExactMatch UBERON:6000172 insect embryonic abdominal segment semapv:ManualMappingCuration +FBbt:00000180 embryonic abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6000180 insect embryonic abdominal segment 8 semapv:ManualMappingCuration +FBbt:00000181 embryonic abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6000181 insect embryonic abdominal segment 9 semapv:ManualMappingCuration +FBbt:00000186 embryonic optic lobe primordium semapv:crossSpeciesExactMatch UBERON:6000186 insect embryonic optic lobe primordium semapv:ManualMappingCuration +FBbt:00000439 stomodeum semapv:crossSpeciesExactMatch UBERON:0000930 stomodeum semapv:ManualMappingCuration +FBbt:00001055 presumptive embryonic/larval nervous system semapv:crossSpeciesExactMatch UBERON:6001055 insect presumptive embryonic/larval nervous system semapv:ManualMappingCuration +FBbt:00001056 presumptive embryonic/larval central nervous system semapv:crossSpeciesExactMatch UBERON:6001056 insect presumptive embryonic/larval central nervous system semapv:ManualMappingCuration +FBbt:00001057 neurogenic region semapv:crossSpeciesExactMatch UBERON:0002346 neurectoderm semapv:ManualMappingCuration +FBbt:00001059 visual primordium semapv:crossSpeciesExactMatch UBERON:6001059 insect visual primordium semapv:ManualMappingCuration +FBbt:00001060 embryonic brain semapv:crossSpeciesExactMatch UBERON:6001060 insect embryonic brain semapv:ManualMappingCuration +FBbt:00001135 proneural cluster semapv:crossSpeciesExactMatch UBERON:6001135 insect proneural cluster semapv:ManualMappingCuration +FBbt:00001648 embryonic imaginal tissue semapv:crossSpeciesExactMatch UBERON:6001648 insect embryonic imaginal precursor semapv:ManualMappingCuration +FBbt:00001649 imaginal disc primordium semapv:crossSpeciesExactMatch UBERON:6001649 insect imaginal disc primordium semapv:ManualMappingCuration +FBbt:00001650 labial disc primordium semapv:crossSpeciesExactMatch UBERON:6001650 insect labial disc primordium semapv:ManualMappingCuration +FBbt:00001652 eye-antennal disc primordium semapv:crossSpeciesExactMatch UBERON:6001652 insect eye-antennal disc primordium semapv:ManualMappingCuration +FBbt:00001653 dorsal thoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001653 insect dorsal thoracic disc primordium semapv:ManualMappingCuration +FBbt:00001655 dorsal mesothoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001655 insect dorsal mesothoracic disc primordium semapv:ManualMappingCuration +FBbt:00001656 dorsal metathoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001656 insect dorsal metathoracic disc primordium semapv:ManualMappingCuration +FBbt:00001657 ventral thoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001657 insect ventral thoracic disc primordium semapv:ManualMappingCuration +FBbt:00001658 ventral prothoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001658 insect ventral prothoracic disc primordium semapv:ManualMappingCuration +FBbt:00001661 genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001661 insect genital disc primordium semapv:ManualMappingCuration +FBbt:00001662 male genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001662 insect male genital disc primordium semapv:ManualMappingCuration +FBbt:00001663 female genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001663 insect female genital disc primordium semapv:ManualMappingCuration +FBbt:00001664 embryonic/larval circulatory system semapv:crossSpeciesExactMatch UBERON:6001664 insect embryonic/larval circulatory system semapv:ManualMappingCuration +FBbt:00001668 embryonic/larval lymph gland semapv:crossSpeciesExactMatch UBERON:6001668 insect embryonic/larval lymph gland semapv:ManualMappingCuration +FBbt:00001718 retrocerebral complex semapv:crossSpeciesExactMatch UBERON:0012325 retrocerebral complex semapv:ManualMappingCuration Uberon term commented as “will be ceded to arthropod anatomy ontology” +FBbt:00001722 ring gland semapv:crossSpeciesExactMatch UBERON:6001722 insect ring gland semapv:ManualMappingCuration +FBbt:00001727 larva semapv:crossSpeciesExactMatch UBERON:0002548 larva semapv:ManualMappingCuration +FBbt:00001728 larval tagma semapv:crossSpeciesExactMatch UBERON:6001728 insect larval tagma semapv:ManualMappingCuration +FBbt:00001729 larval segment semapv:crossSpeciesExactMatch UBERON:6001729 insect larval segment semapv:ManualMappingCuration +FBbt:00001730 larval head semapv:crossSpeciesExactMatch UBERON:6001730 insect larval head semapv:ManualMappingCuration +FBbt:00001731 larval ocular segment semapv:crossSpeciesExactMatch UBERON:6001731 insect larval ocular segment semapv:ManualMappingCuration +FBbt:00001732 larval head segment semapv:crossSpeciesExactMatch UBERON:6001732 insect larval head segment semapv:ManualMappingCuration +FBbt:00001733 larval procephalic segment semapv:crossSpeciesExactMatch UBERON:6001733 insect larval procephalic segment semapv:ManualMappingCuration +FBbt:00001734 larval labral segment semapv:crossSpeciesExactMatch UBERON:6001734 insect larval labral segment semapv:ManualMappingCuration +FBbt:00001735 larval antennal segment semapv:crossSpeciesExactMatch UBERON:6001735 insect larval antennal segment semapv:ManualMappingCuration +FBbt:00001737 larval gnathal segment semapv:crossSpeciesExactMatch UBERON:6001737 insect larval gnathal segment semapv:ManualMappingCuration +FBbt:00001740 larval labial segment semapv:crossSpeciesExactMatch UBERON:6001740 insect larval labial segment semapv:ManualMappingCuration +FBbt:00001741 larval thorax semapv:crossSpeciesExactMatch UBERON:6001741 insect larval thorax semapv:ManualMappingCuration +FBbt:00001742 larval thoracic segment semapv:crossSpeciesExactMatch UBERON:6001742 insect larval thoracic segment semapv:ManualMappingCuration +FBbt:00001743 larval prothoracic segment semapv:crossSpeciesExactMatch UBERON:6001743 insect larval prothoracic segment semapv:ManualMappingCuration +FBbt:00001744 larval mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6001744 insect larval mesothoracic segment semapv:ManualMappingCuration +FBbt:00001745 larval metathoracic segment semapv:crossSpeciesExactMatch UBERON:6001745 insect larval metathoracic segment semapv:ManualMappingCuration +FBbt:00001746 larval abdomen semapv:crossSpeciesExactMatch UBERON:6001746 insect larval abdomen semapv:ManualMappingCuration +FBbt:00001747 larval abdominal segment semapv:crossSpeciesExactMatch UBERON:6001747 insect larval abdominal segment semapv:ManualMappingCuration +FBbt:00001755 larval abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6001755 insect larval abdominal segment 8 semapv:ManualMappingCuration +FBbt:00001756 larval abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6001756 insect larval abdominal segment 9 semapv:ManualMappingCuration +FBbt:00001760 larval imaginal tissue semapv:crossSpeciesExactMatch UBERON:6001760 insect embryonic/larval imaginal precursor semapv:ManualMappingCuration +FBbt:00001761 imaginal disc semapv:crossSpeciesExactMatch UBERON:0000939 imaginal disc semapv:ManualMappingCuration +FBbt:00001764 labial disc semapv:crossSpeciesExactMatch UBERON:6001764 insect labial disc semapv:ManualMappingCuration +FBbt:00001765 clypeo-labral disc semapv:crossSpeciesExactMatch UBERON:6001765 insect clypeo-labral disc semapv:ManualMappingCuration +FBbt:00001766 eye-antennal disc semapv:crossSpeciesExactMatch UBERON:6001766 insect eye-antennal disc semapv:ManualMappingCuration +FBbt:00001767 antennal disc semapv:crossSpeciesExactMatch UBERON:6001767 insect antennal disc semapv:ManualMappingCuration +FBbt:00001776 dorsal thoracic disc semapv:crossSpeciesExactMatch UBERON:6001776 insect dorsal thoracic disc semapv:ManualMappingCuration +FBbt:00001778 wing disc semapv:crossSpeciesExactMatch UBERON:6001778 insect wing disc semapv:ManualMappingCuration +FBbt:00001779 haltere disc semapv:crossSpeciesExactMatch UBERON:6001779 insect haltere disc semapv:ManualMappingCuration +FBbt:00001780 ventral thoracic disc semapv:crossSpeciesExactMatch UBERON:6001780 insect ventral thoracic disc semapv:ManualMappingCuration +FBbt:00001781 prothoracic leg disc semapv:crossSpeciesExactMatch UBERON:6001781 insect prothoracic leg disc semapv:ManualMappingCuration +FBbt:00001784 genital disc semapv:crossSpeciesExactMatch UBERON:6001784 insect genital disc semapv:ManualMappingCuration +FBbt:00001785 male genital disc semapv:crossSpeciesExactMatch UBERON:6001785 insect male genital disc semapv:ManualMappingCuration +FBbt:00001787 female genital disc semapv:crossSpeciesExactMatch UBERON:6001787 insect female genital disc semapv:ManualMappingCuration +FBbt:00001790 histoblast nest semapv:crossSpeciesExactMatch UBERON:6001790 insect histoblast nest semapv:ManualMappingCuration +FBbt:00001842 embryonic/larval digestive system semapv:crossSpeciesExactMatch UBERON:6001842 insect embryonic/larval digestive system semapv:ManualMappingCuration +FBbt:00001845 cephalopharyngeal skeleton semapv:crossSpeciesExactMatch UBERON:6001845 insect cephalopharyngeal skeleton semapv:ManualMappingCuration +FBbt:00001848 epipharyngeal sclerite semapv:crossSpeciesExactMatch UBERON:6001848 insect epipharyngeal sclerite semapv:ManualMappingCuration +FBbt:00001911 embryonic/larval nervous system semapv:crossSpeciesExactMatch UBERON:6001911 insect embryonic/larval nervous system semapv:ManualMappingCuration +FBbt:00001919 embryonic/larval central nervous system semapv:crossSpeciesExactMatch UBERON:6001919 insect embryonic/larval central nervous system semapv:ManualMappingCuration +FBbt:00001920 embryonic/larval brain semapv:crossSpeciesExactMatch UBERON:6001920 insect embryonic/larval brain semapv:ManualMappingCuration +FBbt:00001925 embryonic/larval protocerebrum semapv:crossSpeciesExactMatch UBERON:6001925 insect embryonic/larval protocerebrum semapv:ManualMappingCuration +FBbt:00001956 optic nerve semapv:crossSpeciesExactMatch UBERON:0004904 neuron projection bundle connecting eye with brain semapv:ManualMappingCuration +FBbt:00002639 embryonic/larval sense organ semapv:crossSpeciesExactMatch UBERON:6002639 insect larval sense organ semapv:ManualMappingCuration +FBbt:00002642 embryonic/larval ocular segment sensillum semapv:crossSpeciesExactMatch UBERON:6002642 insect embryonic/larval ocular segment sensillum semapv:ManualMappingCuration +FBbt:00002952 prepupa semapv:crossSpeciesExactMatch UBERON:0003142 prepupa semapv:ManualMappingCuration +FBbt:00002953 pupa semapv:crossSpeciesExactMatch UBERON:0003143 pupa semapv:ManualMappingCuration +FBbt:00003004 adult semapv:crossSpeciesExactMatch UBERON:0007023 adult organism semapv:ManualMappingCuration +FBbt:00003005 adult tagma semapv:crossSpeciesExactMatch UBERON:6003005 insect adult tagma semapv:ManualMappingCuration +FBbt:00003006 adult segment semapv:crossSpeciesExactMatch UBERON:6003006 insect adult segment semapv:ManualMappingCuration +FBbt:00003007 adult head semapv:crossSpeciesExactMatch UBERON:6003007 insect adult head semapv:ManualMappingCuration +FBbt:00003009 adult head segment semapv:crossSpeciesExactMatch UBERON:6003009 insect adult head segment semapv:ManualMappingCuration +FBbt:00003010 adult procephalic segment semapv:crossSpeciesExactMatch UBERON:6003010 insect adult procephalic segment semapv:ManualMappingCuration +FBbt:00003011 adult labral segment semapv:crossSpeciesExactMatch UBERON:6003011 insect adult labral segment semapv:ManualMappingCuration +FBbt:00003012 adult antennal segment semapv:crossSpeciesExactMatch UBERON:6003012 insect adult antennal segment semapv:ManualMappingCuration +FBbt:00003018 adult thorax semapv:crossSpeciesExactMatch UBERON:6003018 insect adult thorax semapv:ManualMappingCuration +FBbt:00003019 adult thoracic segment semapv:crossSpeciesExactMatch UBERON:6003019 insect adult thoracic segment semapv:ManualMappingCuration +FBbt:00003020 adult prothoracic segment semapv:crossSpeciesExactMatch UBERON:6003020 insect adult prothoracic segment semapv:ManualMappingCuration +FBbt:00003021 adult mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6003021 insect adult mesothoracic segment semapv:ManualMappingCuration +FBbt:00003023 adult abdomen semapv:crossSpeciesExactMatch UBERON:6003023 insect adult abdomen semapv:ManualMappingCuration +FBbt:00003024 adult abdominal segment semapv:crossSpeciesExactMatch UBERON:6003024 insect adult abdominal segment semapv:ManualMappingCuration +FBbt:00003039 adult dorsal trunk semapv:crossSpeciesExactMatch UBERON:6003039 dorsal trunk of insect trachea semapv:ManualMappingCuration +FBbt:00003125 alimentary canal semapv:crossSpeciesExactMatch UBERON:0001555 digestive tract semapv:ManualMappingCuration +FBbt:00003126 adult mouth semapv:crossSpeciesExactMatch UBERON:0000165 mouth semapv:ManualMappingCuration +FBbt:00003154 adult heart semapv:crossSpeciesExactMatch UBERON:0015230 dorsal vessel heart semapv:ManualMappingCuration FBbt is missing a stage-neutral ‘heart’ +FBbt:00003259 adult somatic muscle semapv:crossSpeciesExactMatch UBERON:6003259 insect adult somatic muscle semapv:ManualMappingCuration +FBbt:00003559 adult nervous system semapv:crossSpeciesExactMatch UBERON:6003559 insect adult nervous system semapv:ManualMappingCuration +FBbt:00003623 adult central nervous system semapv:crossSpeciesExactMatch UBERON:6003623 insect adult central nervous system semapv:ManualMappingCuration +FBbt:00003624 adult brain semapv:crossSpeciesExactMatch UBERON:6003624 insect adult brain semapv:ManualMappingCuration +FBbt:00003626 supraesophageal ganglion semapv:crossSpeciesExactMatch UBERON:6003626 insect supraesophageal ganglion semapv:ManualMappingCuration +FBbt:00003627 protocerebrum semapv:crossSpeciesExactMatch UBERON:6003627 insect protocerebrum semapv:ManualMappingCuration +FBbt:00003632 adult central complex semapv:crossSpeciesExactMatch UBERON:6003632 insect adult central complex semapv:ManualMappingCuration +FBbt:00003701 adult optic lobe semapv:crossSpeciesExactMatch UBERON:0006795 arthropod optic lobe semapv:ManualMappingCuration +FBbt:00004114 head sensillum semapv:crossSpeciesExactMatch UBERON:0000963 head sensillum semapv:ManualMappingCuration +FBbt:00004199 lens semapv:crossSpeciesExactMatch UBERON:0000207 compound eye corneal lens semapv:ManualMappingCuration +FBbt:00004200 retina semapv:crossSpeciesExactMatch UBERON:0005388 photoreceptor array semapv:ManualMappingCuration +FBbt:00004208 developing embryonic structure semapv:crossSpeciesExactMatch UBERON:0002050 embryonic structure semapv:ManualMappingCuration +FBbt:00004296 sex comb semapv:crossSpeciesExactMatch UBERON:6004296 insect sex comb semapv:ManualMappingCuration +FBbt:00004340 wing hair semapv:crossSpeciesExactMatch UBERON:6004340 insect wing hair semapv:ManualMappingCuration +FBbt:00004475 sclerite semapv:crossSpeciesExactMatch UBERON:6004475 insect sclerite semapv:ManualMappingCuration +FBbt:00004476 tergite semapv:crossSpeciesExactMatch UBERON:6004476 insect tergite semapv:ManualMappingCuration +FBbt:00004477 sternite semapv:crossSpeciesExactMatch UBERON:6004477 insect sternite semapv:ManualMappingCuration +FBbt:00004481 adult external head semapv:crossSpeciesExactMatch UBERON:6004481 insect adult external head semapv:ManualMappingCuration +FBbt:00004482 head capsule semapv:crossSpeciesExactMatch UBERON:0003153 insect head capsule semapv:ManualMappingCuration +FBbt:00004492 occiput semapv:crossSpeciesExactMatch UBERON:0003155 arthropod occiput semapv:ManualMappingCuration Uberon term commented as “belonging to another ontology but kept for disambiguation purposes” +FBbt:00004505 ocellus semapv:crossSpeciesExactMatch UBERON:0003161 dorsal ocellus semapv:ManualMappingCuration +FBbt:00004506 lateral ocellus semapv:crossSpeciesExactMatch UBERON:0003162 lateral ocellus semapv:ManualMappingCuration +FBbt:00004507 medial ocellus semapv:crossSpeciesExactMatch UBERON:0003211 median eye semapv:ManualMappingCuration Uberon term should be under ‘dorsal ocellus’ (UBERON:0003161) +FBbt:00004508 eye semapv:crossSpeciesExactMatch UBERON:0000018 compound eye semapv:ManualMappingCuration +FBbt:00004510 ommatidium semapv:crossSpeciesExactMatch UBERON:0000971 ommatidium semapv:ManualMappingCuration +FBbt:00004511 antenna semapv:crossSpeciesExactMatch UBERON:0000972 antenna semapv:ManualMappingCuration +FBbt:00004519 arista semapv:crossSpeciesExactMatch UBERON:6004519 insect arista semapv:ManualMappingCuration +FBbt:00004520 mouthpart semapv:crossSpeciesExactMatch UBERON:6004520 insect mouthpart semapv:ManualMappingCuration +FBbt:00004521 clypeus semapv:crossSpeciesExactMatch UBERON:6004521 insect clypeus semapv:ManualMappingCuration +FBbt:00004522 labrum semapv:crossSpeciesExactMatch UBERON:0005905 insect labrum semapv:ManualMappingCuration Uberon term has “insect labium” as EXACT synonym while “labium” is a different part in FBbt +FBbt:00004535 proboscis semapv:crossSpeciesExactMatch UBERON:6004535 insect proboscis semapv:ManualMappingCuration +FBbt:00004540 rostrum semapv:crossSpeciesExactMatch UBERON:6004540 insect basiproboscis semapv:ManualMappingCuration +FBbt:00004551 adult external thorax semapv:crossSpeciesExactMatch UBERON:6004551 insect adult external thorax semapv:ManualMappingCuration +FBbt:00004552 tergum semapv:crossSpeciesExactMatch UBERON:6004552 insect tergum semapv:ManualMappingCuration +FBbt:00004557 sternum semapv:crossSpeciesExactMatch UBERON:0003130 arthropod sternum semapv:ManualMappingCuration +FBbt:00004578 adult external mesothorax semapv:crossSpeciesExactMatch UBERON:6004578 insect adult external mesothorax semapv:ManualMappingCuration +FBbt:00004580 mesothoracic tergum semapv:crossSpeciesExactMatch UBERON:6004580 insect mesothoracic tergum semapv:ManualMappingCuration +FBbt:00004640 leg semapv:crossSpeciesExactMatch UBERON:0005895 insect leg semapv:ManualMappingCuration +FBbt:00004642 tibia semapv:crossSpeciesExactMatch UBERON:0003131 arthropod tibia semapv:ManualMappingCuration +FBbt:00004646 tarsal segment semapv:crossSpeciesExactMatch UBERON:6004646 insect tarsal segment semapv:ManualMappingCuration +FBbt:00004648 metatarsus semapv:crossSpeciesExactMatch UBERON:6004648 insect metatarsus semapv:ManualMappingCuration +FBbt:00004663 prothoracic leg semapv:crossSpeciesExactMatch UBERON:6004663 insect prothoracic leg semapv:ManualMappingCuration +FBbt:00004668 prothoracic tarsal segment semapv:crossSpeciesExactMatch UBERON:6004668 insect prothoracic tarsal segment semapv:ManualMappingCuration +FBbt:00004670 prothoracic metatarsus semapv:crossSpeciesExactMatch UBERON:6004670 insect prothoracic metatarsus semapv:ManualMappingCuration +FBbt:00004729 wing semapv:crossSpeciesExactMatch UBERON:0000984 imaginal disc-derived wing semapv:ManualMappingCuration +FBbt:00004751 wing vein semapv:crossSpeciesExactMatch UBERON:0003194 imaginal disc-derived wing vein semapv:ManualMappingCuration +FBbt:00004783 haltere semapv:crossSpeciesExactMatch UBERON:0000987 haltere semapv:ManualMappingCuration +FBbt:00004788 adult external abdomen semapv:crossSpeciesExactMatch UBERON:6004788 insect adult external abdomen semapv:ManualMappingCuration +FBbt:00004823 analia semapv:crossSpeciesExactMatch UBERON:6004823 insect analia semapv:ManualMappingCuration +FBbt:00004824 female analia semapv:crossSpeciesExactMatch UBERON:6004824 insect female analia semapv:ManualMappingCuration +FBbt:00004825 male analia semapv:crossSpeciesExactMatch UBERON:6004825 insect male analia semapv:ManualMappingCuration +FBbt:00004850 phallus semapv:crossSpeciesExactMatch UBERON:0008811 intromittent organ semapv:ManualMappingCuration +FBbt:00004856 organ system semapv:crossSpeciesExactMatch UBERON:0000467 anatomical system semapv:ManualMappingCuration +FBbt:00004857 reproductive system semapv:crossSpeciesExactMatch UBERON:0000990 reproductive system semapv:ManualMappingCuration +FBbt:00004864 female reproductive system semapv:crossSpeciesExactMatch UBERON:0000474 female reproductive system semapv:ManualMappingCuration +FBbt:00004865 ovary semapv:crossSpeciesExactMatch UBERON:0000992 ovary semapv:ManualMappingCuration +FBbt:00004894 egg chamber semapv:crossSpeciesExactMatch UBERON:0003199 egg chamber semapv:ManualMappingCuration +FBbt:00004921 spermathecum semapv:crossSpeciesExactMatch UBERON:0000994 spermathecum semapv:ManualMappingCuration +FBbt:00004924 uterus semapv:crossSpeciesCloseMatch UBERON:0006834 uterus or analog semapv:ManualMappingCuration Debatable: The fly uterus is the site of egg fertilisation, not of embryo development (oviposition happens quickly after fertilization, so not a lot of developpment occurs while the egg is still in the uterus) +FBbt:00004927 male reproductive system semapv:crossSpeciesExactMatch UBERON:0000079 male reproductive system semapv:ManualMappingCuration +FBbt:00004928 testis semapv:crossSpeciesExactMatch UBERON:0000473 testis semapv:ManualMappingCuration +FBbt:00004958 seminal vesicle semapv:crossSpeciesExactMatch UBERON:0006868 seminal fluid secreting gland semapv:ManualMappingCuration +FBbt:00004969 integumentary system semapv:crossSpeciesExactMatch UBERON:0002416 integumental system semapv:ManualMappingCuration +FBbt:00004970 cuticle semapv:crossSpeciesExactMatch UBERON:0001001 chitin-based cuticle semapv:ManualMappingCuration +FBbt:00004973 exocuticle semapv:crossSpeciesExactMatch UBERON:0003201 exocuticle semapv:ManualMappingCuration +FBbt:00004974 endocuticle semapv:crossSpeciesExactMatch UBERON:0003202 endocuticle semapv:ManualMappingCuration Conflicting definition (inner layer in Uberon; middle layer in FBbt) +FBbt:00004979 trichome semapv:crossSpeciesExactMatch UBERON:6004979 insect trichome semapv:ManualMappingCuration +FBbt:00004983 embryonic/larval cuticle semapv:crossSpeciesExactMatch UBERON:6004983 insect embryonic/larval cuticle semapv:ManualMappingCuration +FBbt:00004986 third instar larval cuticle semapv:crossSpeciesExactMatch UBERON:6004986 insect third instar larval cuticle semapv:ManualMappingCuration +FBbt:00004987 puparium cuticle semapv:crossSpeciesExactMatch UBERON:0018656 puparium semapv:ManualMappingCuration +FBbt:00004993 epidermis semapv:crossSpeciesExactMatch UBERON:0007376 outer epithelium semapv:ManualMappingCuration +FBbt:00005023 imaginal precursor semapv:crossSpeciesExactMatch UBERON:6005023 insect imaginal precursor semapv:ManualMappingCuration +FBbt:00005024 tracheal system semapv:crossSpeciesExactMatch UBERON:0005155 open tracheal system semapv:ManualMappingCuration +FBbt:00005036 tracheal pit semapv:crossSpeciesExactMatch UBERON:6005036 insect tracheal pit semapv:ManualMappingCuration +FBbt:00005037 tracheal primordium semapv:crossSpeciesExactMatch UBERON:6005037 insect tracheal primordium semapv:ManualMappingCuration +FBbt:00005043 trachea semapv:crossSpeciesExactMatch UBERON:6005043 insect trachea semapv:ManualMappingCuration +FBbt:00005054 spiracle semapv:crossSpeciesExactMatch UBERON:6005054 insect spiracle semapv:ManualMappingCuration +FBbt:00005055 digestive system semapv:crossSpeciesExactMatch UBERON:0001007 digestive system semapv:ManualMappingCuration +FBbt:00005056 excretory system semapv:crossSpeciesExactMatch UBERON:0001008 renal system semapv:ManualMappingCuration +FBbt:00005057 circulatory system semapv:crossSpeciesExactMatch UBERON:0009054 open circulatory system semapv:ManualMappingCuration +FBbt:00005060 hemocoel semapv:crossSpeciesExactMatch UBERON:0002323 coelemic cavity lumen semapv:ManualMappingCuration +FBbt:00005061 hemolymph semapv:crossSpeciesExactMatch UBERON:0001011 hemolymph semapv:ManualMappingCuration +FBbt:00005066 fat body semapv:crossSpeciesExactMatch UBERON:0003917 arthropod fat body semapv:ManualMappingCuration Uberon definition makes it a single gland localized dorsally to the gut; FBbt definition makes it distributed throughout the body; and not sure it's correct to define it as a gland +FBbt:00005068 endocrine system semapv:crossSpeciesExactMatch UBERON:0000949 endocrine system semapv:ManualMappingCuration +FBbt:00005093 nervous system semapv:crossSpeciesExactMatch UBERON:0001016 nervous system semapv:ManualMappingCuration +FBbt:00005094 central nervous system semapv:crossSpeciesExactMatch UBERON:0001017 central nervous system semapv:ManualMappingCuration +FBbt:00005095 brain semapv:crossSpeciesExactMatch UBERON:0000955 brain semapv:ManualMappingCuration +FBbt:00005096 stomatogastric nervous system semapv:crossSpeciesExactMatch UBERON:6005096 insect stomatogastric nervous system semapv:ManualMappingCuration +FBbt:00005097 ventral nerve cord semapv:crossSpeciesExactMatch UBERON:0000934 ventral nerve cord semapv:ManualMappingCuration +FBbt:00005098 peripheral nervous system semapv:crossSpeciesExactMatch UBERON:0000010 peripheral nervous system semapv:ManualMappingCuration +FBbt:00005099 neuron projection bundle semapv:crossSpeciesExactMatch UBERON:0000122 neuron projection bundle semapv:ManualMappingCuration +FBbt:00005100 tract semapv:crossSpeciesExactMatch UBERON:0001018 axon tract semapv:ManualMappingCuration +FBbt:00005105 nerve semapv:crossSpeciesExactMatch UBERON:0001021 nerve semapv:ManualMappingCuration +FBbt:00005136 sensory nerve semapv:crossSpeciesExactMatch UBERON:0001027 sensory nerve semapv:ManualMappingCuration +FBbt:00005139 neuropil semapv:crossSpeciesExactMatch UBERON:0002606 neuropil semapv:ManualMappingCuration +FBbt:00005155 sense organ semapv:crossSpeciesExactMatch UBERON:0000020 sense organ semapv:ManualMappingCuration +FBbt:00005157 chemosensory sensory organ semapv:crossSpeciesExactMatch UBERON:0000005 chemosensory organ semapv:ManualMappingCuration +FBbt:00005158 olfactory sensory organ semapv:crossSpeciesExactMatch UBERON:0002268 olfactory organ semapv:ManualMappingCuration +FBbt:00005159 gustatory sensory organ semapv:crossSpeciesExactMatch UBERON:0003212 gustatory organ semapv:ManualMappingCuration +FBbt:00005162 photoreceptor semapv:crossSpeciesExactMatch UBERON:0000970 eye semapv:ManualMappingCuration +FBbt:00005168 external sensory organ semapv:crossSpeciesExactMatch UBERON:6005168 insect external sensory organ semapv:ManualMappingCuration +FBbt:00005177 chaeta semapv:crossSpeciesExactMatch UBERON:6005177 insect chaeta semapv:ManualMappingCuration +FBbt:00005215 chordotonal organ semapv:crossSpeciesExactMatch UBERON:0001038 chordotonal organ semapv:ManualMappingCuration +FBbt:00005317 gastrula embryo semapv:crossSpeciesExactMatch UBERON:0004734 gastrula semapv:ManualMappingCuration marked as deprecated in FBbt (but without suggested replacement) +FBbt:00005333 late embryo semapv:crossSpeciesExactMatch UBERON:0000323 late embryo semapv:ManualMappingCuration +FBbt:00005338 second instar larva semapv:crossSpeciesExactMatch UBERON:0018382 second instar larva semapv:ManualMappingCuration marked as deprecated in FBbt (but without suggested replacement) +FBbt:00005378 wing margin semapv:crossSpeciesExactMatch UBERON:6005378 insect wing margin semapv:ManualMappingCuration +FBbt:00005379 foregut semapv:crossSpeciesExactMatch UBERON:0001041 foregut semapv:ManualMappingCuration +FBbt:00005380 pharynx semapv:crossSpeciesExactMatch UBERON:6005380 insect pharynx semapv:ManualMappingCuration +FBbt:00005382 salivary gland semapv:crossSpeciesExactMatch UBERON:0001044 saliva-secreting gland semapv:ManualMappingCuration +FBbt:00005383 midgut semapv:crossSpeciesExactMatch UBERON:0001045 midgut semapv:ManualMappingCuration +FBbt:00005384 hindgut semapv:crossSpeciesExactMatch UBERON:0001046 hindgut semapv:ManualMappingCuration +FBbt:00005386 glomerulus semapv:crossSpeciesExactMatch UBERON:0001047 neural glomerulus semapv:ManualMappingCuration +FBbt:00005393 embryonic/larval integumentary system semapv:crossSpeciesExactMatch UBERON:6005393 insect embryonic/larval integumentary system semapv:ManualMappingCuration +FBbt:00005396 adult integumentary system semapv:crossSpeciesExactMatch UBERON:6005396 insect adult integumentary system semapv:ManualMappingCuration +FBbt:00005426 anlage semapv:crossSpeciesExactMatch UBERON:0007688 anlage semapv:ManualMappingCuration +FBbt:00005427 ectoderm anlage semapv:crossSpeciesExactMatch UBERON:6005427 insect ectoderm anlage semapv:ManualMappingCuration +FBbt:00005461 circulatory system primordium semapv:crossSpeciesExactMatch UBERON:6005461 insect circulatory system primordium semapv:ManualMappingCuration +FBbt:00005467 lymph gland primordium semapv:crossSpeciesExactMatch UBERON:6005467 insect lymph gland primordium semapv:ManualMappingCuration +FBbt:00005495 primordium semapv:crossSpeciesExactMatch UBERON:0001048 primordium semapv:ManualMappingCuration +FBbt:00005514 clypeo-labral disc primordium semapv:crossSpeciesExactMatch UBERON:6005514 insect adult clypeo-labral primordium semapv:ManualMappingCuration +FBbt:00005526 dorsal epidermis primordium semapv:crossSpeciesExactMatch UBERON:6005526 insect dorsal epidermis primordium semapv:ManualMappingCuration +FBbt:00005533 ventral epidermis primordium semapv:crossSpeciesExactMatch UBERON:6005533 insect ventral epidermis primordium semapv:ManualMappingCuration +FBbt:00005538 clypeo-labral primordium semapv:crossSpeciesExactMatch UBERON:6005538 insect clypeo-labral primordium semapv:ManualMappingCuration +FBbt:00005558 ventral ectoderm semapv:crossSpeciesExactMatch UBERON:6005558 insect ventral ectoderm semapv:ManualMappingCuration +FBbt:00005569 presumptive embryonic/larval tracheal system semapv:crossSpeciesExactMatch UBERON:6005569 insect presumptive embryonic/larval tracheal system semapv:ManualMappingCuration +FBbt:00005756 rectum semapv:crossSpeciesExactMatch UBERON:0006866 terminal part of digestive tract semapv:ManualMappingCuration +FBbt:00005757 neurohemal organ semapv:crossSpeciesExactMatch UBERON:0001053 arthropod neurohemal organ semapv:ManualMappingCuration +FBbt:00005786 Malpighian tubule semapv:crossSpeciesExactMatch UBERON:0001054 Malpighian tubule semapv:ManualMappingCuration +FBbt:00005799 corpus cardiacum semapv:crossSpeciesExactMatch UBERON:0001056 corpus cardiacum semapv:ManualMappingCuration +FBbt:00005800 corpus allatum semapv:crossSpeciesExactMatch UBERON:0001057 corpus allatum semapv:ManualMappingCuration +FBbt:00005801 mushroom body semapv:crossSpeciesExactMatch UBERON:0001058 mushroom body semapv:ManualMappingCuration +FBbt:00005802 pars intercerebralis semapv:crossSpeciesExactMatch UBERON:0001059 pars intercerebralis semapv:ManualMappingCuration +FBbt:00005805 Bolwig organ semapv:crossSpeciesExactMatch UBERON:6005805 insect Bolwig organ semapv:ManualMappingCuration +FBbt:00005811 articulation semapv:crossSpeciesExactMatch UBERON:0004905 articulation semapv:ManualMappingCuration +FBbt:00005830 Bolwig organ primordium semapv:crossSpeciesExactMatch UBERON:6005830 insect Bolwig organ primordium semapv:ManualMappingCuration +FBbt:00005831 dorsal imaginal tissue semapv:crossSpeciesExactMatch UBERON:6005831 insect dorsal imaginal precursor semapv:ManualMappingCuration +FBbt:00005835 extraembryonic structure semapv:crossSpeciesExactMatch UBERON:0000478 extraembryonic structure semapv:ManualMappingCuration +FBbt:00005913 arista lateral semapv:crossSpeciesExactMatch UBERON:6005913 insect arista lateral semapv:ManualMappingCuration +FBbt:00006011 pharate adult semapv:crossSpeciesExactMatch UBERON:6006011 insect pharate adult semapv:ManualMappingCuration +FBbt:00006032 mesothoracic tergum primordium semapv:crossSpeciesExactMatch UBERON:6006032 insect mesothoracic tergum primordium semapv:ManualMappingCuration +FBbt:00007000 appendage semapv:crossSpeciesExactMatch UBERON:0000026 appendage semapv:ManualMappingCuration +FBbt:00007001 anatomical structure semapv:crossSpeciesExactMatch UBERON:0000061 anatomical structure semapv:ManualMappingCuration +FBbt:00007003 portion of tissue semapv:crossSpeciesExactMatch UBERON:0000479 tissue semapv:ManualMappingCuration +FBbt:00007004 male organism semapv:crossSpeciesExactMatch UBERON:0003101 male organism semapv:ManualMappingCuration +FBbt:00007005 epithelium semapv:crossSpeciesExactMatch UBERON:0000483 epithelium semapv:ManualMappingCuration +FBbt:00007006 developing material anatomical entity semapv:crossSpeciesExactMatch UBERON:0005423 developing anatomical structure semapv:ManualMappingCuration +FBbt:00007009 organism subdivision semapv:crossSpeciesExactMatch UBERON:0000475 organism subdivision semapv:ManualMappingCuration +FBbt:00007010 multi-tissue structure semapv:crossSpeciesExactMatch UBERON:0000481 multi-tissue structure semapv:ManualMappingCuration +FBbt:00007011 female organism semapv:crossSpeciesExactMatch UBERON:0003100 female organism semapv:ManualMappingCuration +FBbt:00007013 acellular anatomical structure semapv:crossSpeciesExactMatch UBERON:0000476 acellular anatomical structure semapv:ManualMappingCuration +FBbt:00007015 immaterial anatomical entity semapv:crossSpeciesExactMatch UBERON:0000466 immaterial anatomical entity semapv:ManualMappingCuration +FBbt:00007016 material anatomical entity semapv:crossSpeciesExactMatch UBERON:0000465 material anatomical entity semapv:ManualMappingCuration +FBbt:00007017 anatomical space semapv:crossSpeciesExactMatch UBERON:0000464 anatomical space semapv:ManualMappingCuration +FBbt:00007018 appendage segment semapv:crossSpeciesExactMatch UBERON:0010758 subdivision of organism along appendicular axis semapv:ManualMappingCuration +FBbt:00007019 portion of organism substance semapv:crossSpeciesExactMatch UBERON:0000463 organism substance semapv:ManualMappingCuration +FBbt:00007020 metatarsus of male prothoracic leg semapv:crossSpeciesExactMatch UBERON:6007020 insect metatarsus of male prothoracic leg semapv:ManualMappingCuration +FBbt:00007027 cuboidal/columnar epithelium semapv:crossSpeciesExactMatch UBERON:0000485 simple columnar epithelium semapv:ManualMappingCuration +FBbt:00007045 trunk ectoderm semapv:crossSpeciesExactMatch UBERON:6007045 insect trunk ectoderm semapv:ManualMappingCuration +FBbt:00007060 multi-cell-component structure semapv:crossSpeciesExactMatch UBERON:0005162 multi cell part structure semapv:ManualMappingCuration +FBbt:00007070 embryonic/larval posterior inferior protocerebrum semapv:crossSpeciesExactMatch UBERON:6007070 insect centro-posterior medial synaptic neuropil domain semapv:ManualMappingCuration +FBbt:00007091 subperineurial glial sheath semapv:crossSpeciesCloseMatch UBERON:0000202 glial blood brain barrier semapv:ManualMappingCuration Debatable: the subperineurial glia does act “like” a BBB but is it enough to make the two terms equivalent? +FBbt:00007116 presumptive embryonic/larval system semapv:crossSpeciesExactMatch UBERON:6007116 insect presumptive embryonic/larval system semapv:ManualMappingCuration +FBbt:00007145 adult protocerebrum semapv:crossSpeciesExactMatch UBERON:6007145 insect adult protocerebrum semapv:ManualMappingCuration +FBbt:00007149 segment of antenna semapv:crossSpeciesExactMatch UBERON:6007149 segment of antenna semapv:ManualMappingCuration +FBbt:00007150 segment of leg semapv:crossSpeciesExactMatch UBERON:6007150 insect segment of leg semapv:ManualMappingCuration +FBbt:00007152 sensillum semapv:crossSpeciesExactMatch UBERON:0002536 arthropod sensillum semapv:ManualMappingCuration +FBbt:00007229 cell cluster organ semapv:crossSpeciesExactMatch UBERON:0010001 cell cluster organ semapv:ManualMappingCuration +FBbt:00007230 compound cell cluster organ semapv:crossSpeciesExactMatch UBERON:0014732 compound cell cluster organ semapv:ManualMappingCuration +FBbt:00007231 external sensillum semapv:crossSpeciesExactMatch UBERON:6007231 insect external sensillum semapv:ManualMappingCuration +FBbt:00007232 eo-type sensillum semapv:crossSpeciesExactMatch UBERON:6007232 insect eo-type sensillum semapv:ManualMappingCuration +FBbt:00007233 internal sensillum semapv:crossSpeciesExactMatch UBERON:6007233 insect internal sensillum semapv:ManualMappingCuration +FBbt:00007240 embryonic/larval sensillum semapv:crossSpeciesExactMatch UBERON:6007240 insect embryonic/larval sensillum semapv:ManualMappingCuration +FBbt:00007242 embryonic/larval head sensillum semapv:crossSpeciesExactMatch UBERON:6007242 insect embryonic/larval head sensillum semapv:ManualMappingCuration +FBbt:00007245 cuticular specialization semapv:crossSpeciesExactMatch UBERON:6007245 insect cuticular specialization semapv:ManualMappingCuration +FBbt:00007248 chorionic specialization semapv:crossSpeciesExactMatch UBERON:6007248 insect chorionic specialization semapv:ManualMappingCuration +FBbt:00007276 anatomical group semapv:crossSpeciesExactMatch UBERON:0034923 disconnected anatomical group semapv:ManualMappingCuration +FBbt:00007277 anatomical cluster semapv:crossSpeciesExactMatch UBERON:0000477 anatomical cluster semapv:ManualMappingCuration +FBbt:00007278 non-connected functional system semapv:crossSpeciesExactMatch UBERON:0015203 non-connected functional system semapv:ManualMappingCuration +FBbt:00007280 embryonic/larval head sense organ semapv:crossSpeciesExactMatch UBERON:6007280 insect embryonic/larval head sense organ semapv:ManualMappingCuration +FBbt:00007284 region of integument semapv:crossSpeciesExactMatch UBERON:6007284 insect region of integument semapv:ManualMappingCuration +FBbt:00007285 segmental subdivision of integument semapv:crossSpeciesExactMatch UBERON:6007285 insect segmental subdivision of integument semapv:ManualMappingCuration +FBbt:00007288 integumentary specialization semapv:crossSpeciesExactMatch UBERON:6007288 insect integumentary specialisation semapv:ManualMappingCuration +FBbt:00007289 tagmatic subdivision of integument semapv:crossSpeciesExactMatch UBERON:6007289 insect tagmatic subdivision of integument semapv:ManualMappingCuration +FBbt:00007330 organ system subdivision semapv:crossSpeciesExactMatch UBERON:0011216 organ system subdivision semapv:ManualMappingCuration +FBbt:00007331 segmental subdivision of organ system semapv:crossSpeciesExactMatch UBERON:6007331 insect segmental subdivision of organ system semapv:ManualMappingCuration +FBbt:00007373 internal sense organ semapv:crossSpeciesExactMatch UBERON:6007373 insect internal sense organ semapv:ManualMappingCuration +FBbt:00007410 tracheal lumen semapv:crossSpeciesExactMatch UBERON:0006832 lumen of open tracheal system trachea semapv:ManualMappingCuration +FBbt:00007424 epithelial furrow semapv:crossSpeciesExactMatch UBERON:6007424 insect epithelial furrow semapv:ManualMappingCuration +FBbt:00007474 epithelial tube semapv:crossSpeciesExactMatch UBERON:0003914 epithelial tube semapv:ManualMappingCuration +FBbt:00007692 sensory system semapv:crossSpeciesExactMatch UBERON:0001032 sensory system semapv:ManualMappingCuration +FBbt:00016022 abdominal histoblast primordium semapv:crossSpeciesExactMatch UBERON:6016022 insect abdominal histoblast primordium semapv:ManualMappingCuration +FBbt:00040003 non-connected developing system semapv:crossSpeciesExactMatch UBERON:6040003 insect non-connected developing system semapv:ManualMappingCuration +FBbt:00040005 synaptic neuropil semapv:crossSpeciesExactMatch UBERON:6040005 insect synaptic neuropil semapv:ManualMappingCuration +FBbt:00040007 synaptic neuropil domain semapv:crossSpeciesExactMatch UBERON:6040007 insect synaptic neuropil domain semapv:ManualMappingCuration +FBbt:00041000 synaptic neuropil block semapv:crossSpeciesExactMatch UBERON:6041000 insect synaptic neuropil block semapv:ManualMappingCuration +FBbt:00047153 anus semapv:crossSpeciesExactMatch UBERON:0001245 anus semapv:ManualMappingCuration +FBbt:00047166 gut epithelium semapv:crossSpeciesExactMatch UBERON:0003929 digestive tract epithelium semapv:ManualMappingCuration +FBbt:00058291 dorsal vessel semapv:crossSpeciesExactMatch UBERON:0015231 circulatory system dorsal vessel semapv:ManualMappingCuration +FBbt:00100152 row semapv:crossSpeciesExactMatch UBERON:0034926 anatomical row semapv:ManualMappingCuration +FBbt:00100153 sensillum row semapv:crossSpeciesExactMatch UBERON:6100153 insect sensilla row semapv:ManualMappingCuration +FBbt:00100313 multicellular structure semapv:crossSpeciesExactMatch UBERON:0010000 multicellular anatomical structure semapv:ManualMappingCuration +FBbt:00100314 duct semapv:crossSpeciesExactMatch UBERON:0000058 duct semapv:ManualMappingCuration +FBbt:00100315 gut section semapv:crossSpeciesExactMatch UBERON:0004921 subdivision of digestive tract semapv:ManualMappingCuration +FBbt:00100316 diverticulum of gut semapv:crossSpeciesExactMatch UBERON:0009854 digestive tract diverticulum semapv:ManualMappingCuration +FBbt:00100317 gland semapv:crossSpeciesExactMatch UBERON:0002530 gland semapv:ManualMappingCuration +FBbt:00110636 adult cerebral ganglion semapv:crossSpeciesExactMatch UBERON:6110636 insect adult cerebral ganglion semapv:ManualMappingCuration +FBbt:00110746 presumptive prothoracic metatarsus semapv:crossSpeciesExactMatch UBERON:6110746 insect presumptive prothoracic metatarsus semapv:ManualMappingCuration +FBbt:00110811 presumptive arista semapv:crossSpeciesExactMatch UBERON:6110811 insect presumptive arista semapv:ManualMappingCuration +FBbt:10000000 anatomical entity semapv:crossSpeciesExactMatch UBERON:0001062 anatomical entity semapv:ManualMappingCuration diff --git a/src/ontology/bridge/cl-bridge-to-caro.owl b/src/ontology/bridge/cl-bridge-to-caro.owl index 2c55049aa..6be863a80 100644 --- a/src/ontology/bridge/cl-bridge-to-caro.owl +++ b/src/ontology/bridge/cl-bridge-to-caro.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl index 7ef80ef77..d63abff06 100644 --- a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Jonathan Bard CL editors Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA. diff --git a/src/ontology/bridge/cl-bridge-to-emapa.owl b/src/ontology/bridge/cl-bridge-to-emapa.owl index 7c2d50d95..9de670282 100644 --- a/src/ontology/bridge/cl-bridge-to-emapa.owl +++ b/src/ontology/bridge/cl-bridge-to-emapa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Anne Niknejad Aurelie Comte CL editors diff --git a/src/ontology/bridge/cl-bridge-to-fbbt.owl b/src/ontology/bridge/cl-bridge-to-fbbt.owl index ecddb7b95..db4de3fac 100644 --- a/src/ontology/bridge/cl-bridge-to-fbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-fbbt.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + David Osumi-Sutherland CL editors Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and CL. diff --git a/src/ontology/bridge/cl-bridge-to-fma.owl b/src/ontology/bridge/cl-bridge-to-fma.owl index e8b20665b..7d727f271 100644 --- a/src/ontology/bridge/cl-bridge-to-fma.owl +++ b/src/ontology/bridge/cl-bridge-to-fma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Onard Mejino Terry Hayamizu CL editors diff --git a/src/ontology/bridge/cl-bridge-to-go.owl b/src/ontology/bridge/cl-bridge-to-go.owl index 5238e9417..d61d252da 100644 --- a/src/ontology/bridge/cl-bridge-to-go.owl +++ b/src/ontology/bridge/cl-bridge-to-go.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-kupo.owl b/src/ontology/bridge/cl-bridge-to-kupo.owl index 65596a98a..8ea4d562d 100644 --- a/src/ontology/bridge/cl-bridge-to-kupo.owl +++ b/src/ontology/bridge/cl-bridge-to-kupo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-ma.owl b/src/ontology/bridge/cl-bridge-to-ma.owl index cec7ed53a..11d43e367 100644 --- a/src/ontology/bridge/cl-bridge-to-ma.owl +++ b/src/ontology/bridge/cl-bridge-to-ma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + George Gkoutos CL editors Terry Hayamizu diff --git a/src/ontology/bridge/cl-bridge-to-ncit.owl b/src/ontology/bridge/cl-bridge-to-ncit.owl index ed48b276b..3c5c1e829 100644 --- a/src/ontology/bridge/cl-bridge-to-ncit.owl +++ b/src/ontology/bridge/cl-bridge-to-ncit.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-sctid.owl b/src/ontology/bridge/cl-bridge-to-sctid.owl index cf98fde51..16a99f101 100644 --- a/src/ontology/bridge/cl-bridge-to-sctid.owl +++ b/src/ontology/bridge/cl-bridge-to-sctid.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + OBOL CL editors Rough subclass axioms between SNOMED-CT and CL. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. diff --git a/src/ontology/bridge/cl-bridge-to-wbbt.owl b/src/ontology/bridge/cl-bridge-to-wbbt.owl index 03bec9597..4f7aa4324 100644 --- a/src/ontology/bridge/cl-bridge-to-wbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-wbbt.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-xao.owl b/src/ontology/bridge/cl-bridge-to-xao.owl index b31d4a2db..6b87171e9 100644 --- a/src/ontology/bridge/cl-bridge-to-xao.owl +++ b/src/ontology/bridge/cl-bridge-to-xao.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Erik Segerdell VG Ponferrada CL editors diff --git a/src/ontology/bridge/cl-bridge-to-zfa.owl b/src/ontology/bridge/cl-bridge-to-zfa.owl index 6262ff1b0..203efacda 100644 --- a/src/ontology/bridge/cl-bridge-to-zfa.owl +++ b/src/ontology/bridge/cl-bridge-to-zfa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Melissa Haendel Veri Van Slyke Yvonne Bradford diff --git a/src/ontology/bridge/uberon-bridge-to-aeo.owl b/src/ontology/bridge/uberon-bridge-to-aeo.owl index f4a914ed0..6712eeb56 100644 --- a/src/ontology/bridge/uberon-bridge-to-aeo.owl +++ b/src/ontology/bridge/uberon-bridge-to-aeo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-bfo.owl b/src/ontology/bridge/uberon-bridge-to-bfo.owl index d511a5e6e..bd6b2c41e 100644 --- a/src/ontology/bridge/uberon-bridge-to-bfo.owl +++ b/src/ontology/bridge/uberon-bridge-to-bfo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-caro.owl b/src/ontology/bridge/uberon-bridge-to-caro.owl index 8b4ab8d2a..ba3143371 100644 --- a/src/ontology/bridge/uberon-bridge-to-caro.owl +++ b/src/ontology/bridge/uberon-bridge-to-caro.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-dhba.owl b/src/ontology/bridge/uberon-bridge-to-dhba.owl index 3a97bca0a..6118facec 100644 --- a/src/ontology/bridge/uberon-bridge-to-dhba.owl +++ b/src/ontology/bridge/uberon-bridge-to-dhba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl index f55bc387b..54c871939 100644 --- a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Jonathan Bard Uberon editors Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA. diff --git a/src/ontology/bridge/uberon-bridge-to-emapa.owl b/src/ontology/bridge/uberon-bridge-to-emapa.owl index 191941fb6..b8f0c3fc8 100644 --- a/src/ontology/bridge/uberon-bridge-to-emapa.owl +++ b/src/ontology/bridge/uberon-bridge-to-emapa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Anne Niknejad Aurelie Comte Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-fbbt.owl b/src/ontology/bridge/uberon-bridge-to-fbbt.owl index 2e89e82da..697c4797e 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbbt.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + David Osumi-Sutherland Uberon editors Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and Uberon. diff --git a/src/ontology/bridge/uberon-bridge-to-fbdv.owl b/src/ontology/bridge/uberon-bridge-to-fbdv.owl index 743ff0003..cd93c7653 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-fma.owl b/src/ontology/bridge/uberon-bridge-to-fma.owl index 8f14071a6..22d2d1d37 100644 --- a/src/ontology/bridge/uberon-bridge-to-fma.owl +++ b/src/ontology/bridge/uberon-bridge-to-fma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Onard Mejino Terry Hayamizu Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-go.owl b/src/ontology/bridge/uberon-bridge-to-go.owl index 019669906..004e311f7 100644 --- a/src/ontology/bridge/uberon-bridge-to-go.owl +++ b/src/ontology/bridge/uberon-bridge-to-go.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hao.owl b/src/ontology/bridge/uberon-bridge-to-hao.owl index 406e37fe0..91a908247 100644 --- a/src/ontology/bridge/uberon-bridge-to-hao.owl +++ b/src/ontology/bridge/uberon-bridge-to-hao.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hba.owl b/src/ontology/bridge/uberon-bridge-to-hba.owl index 8596f2295..42ffade9b 100644 --- a/src/ontology/bridge/uberon-bridge-to-hba.owl +++ b/src/ontology/bridge/uberon-bridge-to-hba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl index 175028844..1e8b543bf 100644 --- a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-kupo.owl b/src/ontology/bridge/uberon-bridge-to-kupo.owl index 0a39f66c9..25911d850 100644 --- a/src/ontology/bridge/uberon-bridge-to-kupo.owl +++ b/src/ontology/bridge/uberon-bridge-to-kupo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ma.owl b/src/ontology/bridge/uberon-bridge-to-ma.owl index 511baf1f0..d313c5d90 100644 --- a/src/ontology/bridge/uberon-bridge-to-ma.owl +++ b/src/ontology/bridge/uberon-bridge-to-ma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + George Gkoutos Terry Hayamizu Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl index a5238df9f..5b48644f7 100644 --- a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ncit.owl b/src/ontology/bridge/uberon-bridge-to-ncit.owl index a5fbb4951..6cb165beb 100644 --- a/src/ontology/bridge/uberon-bridge-to-ncit.owl +++ b/src/ontology/bridge/uberon-bridge-to-ncit.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-oges.owl b/src/ontology/bridge/uberon-bridge-to-oges.owl index 726c3423c..41c248b83 100644 --- a/src/ontology/bridge/uberon-bridge-to-oges.owl +++ b/src/ontology/bridge/uberon-bridge-to-oges.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-pba.owl b/src/ontology/bridge/uberon-bridge-to-pba.owl index f69eb45b6..8e0032792 100644 --- a/src/ontology/bridge/uberon-bridge-to-pba.owl +++ b/src/ontology/bridge/uberon-bridge-to-pba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-sctid.owl b/src/ontology/bridge/uberon-bridge-to-sctid.owl index 5298fd17a..24f3480c9 100644 --- a/src/ontology/bridge/uberon-bridge-to-sctid.owl +++ b/src/ontology/bridge/uberon-bridge-to-sctid.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + OBOL Uberon editors Rough subclass axioms between SNOMED-CT and Uberon. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. diff --git a/src/ontology/bridge/uberon-bridge-to-spd.owl b/src/ontology/bridge/uberon-bridge-to-spd.owl index 0300d89de..7bd21656b 100644 --- a/src/ontology/bridge/uberon-bridge-to-spd.owl +++ b/src/ontology/bridge/uberon-bridge-to-spd.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-tads.owl b/src/ontology/bridge/uberon-bridge-to-tads.owl index 4ed612c67..f5c73e1c0 100644 --- a/src/ontology/bridge/uberon-bridge-to-tads.owl +++ b/src/ontology/bridge/uberon-bridge-to-tads.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-tgma.owl b/src/ontology/bridge/uberon-bridge-to-tgma.owl index 63340eb98..b3d9ec531 100644 --- a/src/ontology/bridge/uberon-bridge-to-tgma.owl +++ b/src/ontology/bridge/uberon-bridge-to-tgma.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-wbbt.owl b/src/ontology/bridge/uberon-bridge-to-wbbt.owl index 122198347..1b98cf9dd 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbbt.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-wbls.owl b/src/ontology/bridge/uberon-bridge-to-wbls.owl index 91b75c9dc..932a3b63d 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbls.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbls.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-xao.owl b/src/ontology/bridge/uberon-bridge-to-xao.owl index 04196f2f7..dfe713341 100644 --- a/src/ontology/bridge/uberon-bridge-to-xao.owl +++ b/src/ontology/bridge/uberon-bridge-to-xao.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Erik Segerdell VG Ponferrada Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-zfa.owl b/src/ontology/bridge/uberon-bridge-to-zfa.owl index b0182da05..9312c251f 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfa.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Melissa Haendel Veri Van Slyke Yvonne Bradford diff --git a/src/ontology/bridge/uberon-bridge-to-zfs.owl b/src/ontology/bridge/uberon-bridge-to-zfs.owl index 5c573d423..8001ff293 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfs.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfs.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 851d0e728..13a3aaad0 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-11-02") + +Annotation(owl:versionInfo "2024-11-25") Declaration(Class()) Declaration(Class()) @@ -695,7 +695,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -768,8 +767,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2382,7 +2379,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2404,16 +2400,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3095,9 +3082,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3105,8 +3089,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3170,7 +3152,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3250,10 +3231,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4153,7 +4130,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4656,8 +4632,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4755,15 +4729,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4809,7 +4774,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5045,9 +5009,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5546,7 +5507,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5649,14 +5609,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5682,7 +5639,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5718,12 +5674,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5930,8 +5882,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5961,7 +5911,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6522,8 +6471,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8095,7 +8042,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8384,7 +8330,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8430,7 +8375,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8522,9 +8466,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8926,8 +8867,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9158,7 +9097,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9447,7 +9385,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9546,10 +9483,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9659,9 +9593,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9749,9 +9680,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9778,7 +9706,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10911,7 +10838,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13113,7 +13039,12 @@ AnnotationAssertion(rdfs:seeAlso (database_cross_reference) +AnnotationAssertion( "disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) \"NCIT:C41009\"^^xsd:string") +AnnotationAssertion( "An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.") +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "database_cross_reference") +AnnotationAssertion(rdfs:label "has cross-reference") # Annotation Property: (has exact synonym) @@ -16063,7 +15994,7 @@ SubClassOf( ObjectSomeValuesFrom( (alpha-hydroxy ketone) -AnnotationAssertion( "An alpha-oxyketone that has a hydroxy group as the alpha-oxy moiety.") +AnnotationAssertion( "A ketone containing a hydroxy group on the alpha-carbon relative to the C=O group.") AnnotationAssertion(Annotation( "Europe PMC") "PMID:15326516") AnnotationAssertion(Annotation( "Europe PMC") "PMID:19908854") AnnotationAssertion(Annotation( "Europe PMC") "PMID:20382022") @@ -16077,8 +16008,8 @@ AnnotationAssertion(Annotation( "CHEBI:139588") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "alpha-hydroxy ketone") -SubClassOf( ) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (primary alpha-hydroxy ketone) @@ -16196,7 +16127,6 @@ AnnotationAssertion( "CHEBI:23212") AnnotationAssertion( "CHEBI:3665") AnnotationAssertion( "CHEBI:41524") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1736748") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:62-49-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:62-49-7") AnnotationAssertion( "DrugBank:DB00122") @@ -16316,7 +16246,6 @@ AnnotationAssertion( "CHEBI:22169") AnnotationAssertion( "CHEBI:2387") AnnotationAssertion( "CHEBI:40486") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:506007") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:64-19-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:64-19-7") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:64-19-7") @@ -16385,7 +16314,6 @@ AnnotationAssertion( "CHEBI:44701") AnnotationAssertion( "CHEBI:44819") AnnotationAssertion( "CHEBI:5585") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587155") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7732-18-5") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7732-18-5") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7732-18-5") @@ -16518,7 +16446,6 @@ AnnotationAssertion( "CHEBI:22249") AnnotationAssertion( "CHEBI:2359") AnnotationAssertion( "CHEBI:40938") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:73010") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:56-65-5") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:56-65-5") AnnotationAssertion( "DrugBank:DB00171") @@ -16654,7 +16581,6 @@ SubClassOf( "A monocarboxylic acid anion that is the conjugate base of formic acid. Induces severe metabolic acidosis and ocular injury in human subjects.") AnnotationAssertion( "CHEBI:14276") AnnotationAssertion( "CHEBI:24081") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1901205") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:71-47-6") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:71-47-6") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1006") @@ -16706,7 +16632,6 @@ SubClassOf( "An optically active form of glutamic acid having D-configuration.") AnnotationAssertion( "CHEBI:21023") AnnotationAssertion( "CHEBI:4183") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1723800") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:6893-26-1") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:6893-26-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:6893-26-1") @@ -16762,7 +16687,6 @@ AnnotationAssertion( "CHEBI:42825") AnnotationAssertion( "CHEBI:6224") AnnotationAssertion( "BPDB:2297") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1723801") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:56-86-0") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:56-86-0") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:56-86-0") @@ -16830,7 +16754,6 @@ AnnotationAssertion( "CHEBI:44284") AnnotationAssertion( "CHEBI:44404") AnnotationAssertion( "CHEBI:7434") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587154") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7664-41-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7664-41-7") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7664-41-7") @@ -16935,7 +16858,6 @@ AnnotationAssertion( "CHEBI:15135") AnnotationAssertion( "CHEBI:45687") AnnotationAssertion( "CHEBI:9335") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3648446") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14808-79-8") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:14808-79-8") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2120") @@ -17060,7 +16982,6 @@ AnnotationAssertion( "CHEBI:40558") AnnotationAssertion( "CHEBI:40825") AnnotationAssertion( "CHEBI:40906") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:93029") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:58-61-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:58-61-7") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:58-61-7") @@ -17164,7 +17085,6 @@ AnnotationAssertion( "CHEBI:23011") AnnotationAssertion( "CHEBI:3283") AnnotationAssertion( "CHEBI:48829") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1900390") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:124-38-9") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:124-38-9") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:124-38-9") @@ -17288,7 +17208,6 @@ AnnotationAssertion( "CHEBI:45028") AnnotationAssertion( "CHEBI:8399") AnnotationAssertion(Annotation( "Europe PMC") "AGR:IND44654981") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2698270") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:126-49-8") AnnotationAssertion( "DrugBank:DB08427") AnnotationAssertion( "HMDB:HMDB0012283") @@ -17369,7 +17288,6 @@ AnnotationAssertion( "CHEBI:22236") AnnotationAssertion( "CHEBI:2470") AnnotationAssertion( "CHEBI:40579") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:608603") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:73-24-5") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:73-24-5") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:73-24-5") @@ -17419,7 +17337,6 @@ AnnotationAssertion( "CHEBI:22703") AnnotationAssertion( "CHEBI:3025") AnnotationAssertion( "CHEBI:41187") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:969212") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:71-43-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:71-43-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:71-43-2") @@ -17529,7 +17446,6 @@ AnnotationAssertion( "CHEBI:22244") AnnotationAssertion( "CHEBI:2342") AnnotationAssertion( "CHEBI:40553") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:67722") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:20398-34-9") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:58-64-0") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:58-64-0") @@ -17566,7 +17482,6 @@ AnnotationAssertion( "CHEBI:27161") AnnotationAssertion( "CHEBI:46157") AnnotationAssertion( "CHEBI:9767") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:125513") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:61-54-1") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:61-54-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:61-54-1") @@ -17608,7 +17523,6 @@ AnnotationAssertion( "CHEBI:14577") AnnotationAssertion( "CHEBI:25180") AnnotationAssertion( "CHEBI:6730") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:205542") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:73-31-4") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:73-31-4") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:73-31-4") @@ -17677,7 +17591,6 @@ AnnotationAssertion( "CHEBI:20318") AnnotationAssertion( "CHEBI:40483") AnnotationAssertion( "BPDB:2298") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:906818") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:56-12-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:56-12-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:56-12-2") @@ -17755,7 +17668,6 @@ AnnotationAssertion( "CHEBI:13898") AnnotationAssertion( "CHEBI:22870") AnnotationAssertion( "CHEBI:3099") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:74376") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:635-65-4") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:635-65-4") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:411033") @@ -17836,7 +17748,6 @@ AnnotationAssertion( "CHEBI:21067") AnnotationAssertion( "CHEBI:42207") AnnotationAssertion( "CHEBI:4224") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2804068") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:673-06-3") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:673-06-3") AnnotationAssertion( "DrugBank:DB02556") @@ -17879,7 +17790,6 @@ AnnotationAssertion( "CHEBI:439") AnnotationAssertion( "CHEBI:45786") AnnotationAssertion( "CHEBI:8453") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1915950") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:57-83-0") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:57-83-0") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:57-83-0") @@ -18027,7 +17937,6 @@ SubClassOf( ObjectSomeValuesFrom( "The 7H-tautomer of purine.") AnnotationAssertion( "CHEBI:14968") AnnotationAssertion( "CHEBI:8639") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3200") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:601779") AnnotationAssertion( "HMDB:HMDB0001366") AnnotationAssertion( "KEGG:C15587") @@ -18088,7 +17997,6 @@ AnnotationAssertion( "CHEBI:44885") AnnotationAssertion( "CHEBI:45079") AnnotationAssertion( "CHEBI:6282") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1910408") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:63-91-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:63-91-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:63-91-2") @@ -18208,7 +18116,6 @@ AnnotationAssertion( "CHEBI:26883") AnnotationAssertion( "CHEBI:45798") AnnotationAssertion( "CHEBI:9461") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1915399") AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3653705") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:58-22-0") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:58-22-0") @@ -18341,7 +18248,6 @@ AnnotationAssertion( "CHEBI:27022") AnnotationAssertion( "CHEBI:44023") AnnotationAssertion( "CHEBI:9624") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:635760") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:108-88-3") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:108-88-3") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:108-88-3") @@ -18424,7 +18330,6 @@ AnnotationAssertion( "CHEBI:12392") AnnotationAssertion( "CHEBI:22834") AnnotationAssertion( "CHEBI:40987") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1917416") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7235-40-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7235-40-7") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7235-40-7") @@ -18629,7 +18534,6 @@ AnnotationAssertion( "CHEBI:46070") AnnotationAssertion( "CHEBI:46161") AnnotationAssertion( "CHEBI:6313") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:392441") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:60-18-4") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:60-18-4") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:60-18-4") @@ -18688,7 +18592,6 @@ SubClassOf( ObjectSomeValuesFrom( "A short-chain fatty acid anion that is the conjugate base of butyric acid, obtained by deprotonation of the carboxy group.") AnnotationAssertion( "CHEBI:13924") AnnotationAssertion( "CHEBI:22946") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3601060") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:461-55-2") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:324289") AnnotationAssertion( "KEGG:C00246") @@ -18818,7 +18721,6 @@ AnnotationAssertion( "CHEBI:15277") AnnotationAssertion( "CHEBI:27176") AnnotationAssertion( "CHEBI:9800") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:515881") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:55520-40-6") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:556-03-6") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:27744") @@ -18853,7 +18755,6 @@ SubClassOf( ObjectSomeValuesFrom( "An alpha-amino acid that is glutaric acid bearing a single amino substituent at position 2.") AnnotationAssertion( "CHEBI:24314") AnnotationAssertion( "CHEBI:5431") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1723799") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:617-65-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:617-65-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:617-65-2") @@ -19044,7 +18945,6 @@ AnnotationAssertion( "CHEBI:24596") AnnotationAssertion( "CHEBI:43187") AnnotationAssertion( "CHEBI:817") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2012") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:51-45-6") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:51-45-6") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:51-45-6") @@ -19111,7 +19011,6 @@ AnnotationAssertion( "CHEBI:25592") AnnotationAssertion( "CHEBI:258884") AnnotationAssertion( "CHEBI:43725") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2804840") AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:4231961") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:51-41-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:51-41-2") @@ -19160,7 +19059,6 @@ AnnotationAssertion( "CHEBI:14791") AnnotationAssertion( "CHEBI:45024") AnnotationAssertion( "CHEBI:7793") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3903772") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14265-44-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:14265-44-2") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1997") @@ -19487,7 +19385,7 @@ SubClassOf( ObjectSomeValuesFrom( (NMR chemical shift reference compound) -AnnotationAssertion( "Any compound that produces a peak used to reference an NMR spectrum during data pre-processing.") +AnnotationAssertion( "Any compound that produces a peak used as reference frequency in the delta chemical shift scale.") AnnotationAssertion( "chebi_ontology") AnnotationAssertion(Annotation( "ChEBI") "NMR chemical shift reference compounds") AnnotationAssertion(Annotation( "ChEBI") "NMR chemical shift standard") @@ -20554,7 +20452,6 @@ SubClassOf( (phosphoric acid) AnnotationAssertion( "A phosphorus oxoacid that consists of one oxo and three hydroxy groups joined covalently to a central phosphorus atom.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1921286") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7664-38-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7664-38-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7664-38-2") @@ -21272,7 +21169,6 @@ AnnotationAssertion( "CHEBI:22306") AnnotationAssertion( "CHEBI:2563") AnnotationAssertion( "CHEBI:40919") -AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:3224996") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:52-39-1") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:52-39-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:52-39-1") @@ -21341,7 +21237,6 @@ SubClassOf( ObjectSomeValuesFrom( "An aromatic amino acid that is alanine in which one of the methyl hydrogens is substituted by a phenyl group.") AnnotationAssertion( "CHEBI:25984") AnnotationAssertion( "CHEBI:8089") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1910407") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:150-30-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:150-30-1") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:50836") @@ -21431,7 +21326,6 @@ AnnotationAssertion( "CHEBI:21111") AnnotationAssertion( "CHEBI:42299") AnnotationAssertion( "CHEBI:4258") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2212157") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:556-02-5") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:556-02-5") AnnotationAssertion( "DrugBank:DB03839") @@ -21530,7 +21424,6 @@ AnnotationAssertion( "CHEBI:1420") AnnotationAssertion( "CHEBI:26652") AnnotationAssertion( "CHEBI:49894") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:143524") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:50-67-9") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:50-67-9") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1861995") @@ -21591,7 +21484,6 @@ SubClassOf( "CHEBI:27324") AnnotationAssertion( "CHEBI:43817") AnnotationAssertion( "CHEBI:6576") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2068550") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:127-40-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:127-40-2") AnnotationAssertion( "DrugBank:DB00137") @@ -21654,7 +21546,6 @@ SubClassOf( ObjectSomeValuesFrom( "The R-enantiomer of adrenaline. It is a hormone secreted by the adrenal glands resulting in the 'fight-or-flight' response.") AnnotationAssertion( "CHEBI:1942") AnnotationAssertion( "CHEBI:23928") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2368277") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:51-43-4") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:51-43-4") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:51-43-4") @@ -22051,7 +21942,6 @@ SubClassOf( ObjectSomeValuesFrom( "A prephenate(2-) obtained by deprotonation of both carboxy groups of (1s,4s)-prephenic acid; major species at pH 7.3.") AnnotationAssertion( "CHEBI:14884") AnnotationAssertion( "CHEBI:26256") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3682733") AnnotationAssertion( "KEGG:C00254") AnnotationAssertion( "MetaCyc:PREPHENATE") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3682733") @@ -22134,7 +22024,6 @@ SubClassOf( ObjectSomeValuesFrom( (glutamate(2-)) AnnotationAssertion( "A dicarboxylic acid dianion that is the conjugate base of glutamate(1-).") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:4134100") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:327903") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:4134100") AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "2-aminopentanedioate") @@ -22188,7 +22077,6 @@ AnnotationAssertion( "CHEBI:13704") AnnotationAssertion( "CHEBI:22165") AnnotationAssertion( "CHEBI:40480") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1901470") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:71-50-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:71-50-1") AnnotationAssertion( "DrugBank:DB03166") @@ -22259,7 +22147,6 @@ SubClassOf( "An gamma-amino acid anion resulting from the deprotonation of the carboxy group of gamma-aminobutyric acid.") AnnotationAssertion( "CHEBI:11961") AnnotationAssertion( "CHEBI:20317") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3536873") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:559138") AnnotationAssertion( "KEGG:C00334") AnnotationAssertion(Annotation( "Europe PMC") "PMID:12509893") @@ -22305,7 +22192,6 @@ AnnotationAssertion( "CHEBI:42460") AnnotationAssertion( "CHEBI:5145") AnnotationAssertion( "BPDB:1749") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1209246") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:64-18-6") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:64-18-6") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:64-18-6") @@ -22423,7 +22309,6 @@ AnnotationAssertion( "CHEBI:22948") AnnotationAssertion( "CHEBI:3234") AnnotationAssertion( "CHEBI:41208") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:906770") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:107-92-6") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:107-92-6") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:107-92-6") @@ -22528,7 +22413,6 @@ SubClassOf( (L-phenylalaninate) AnnotationAssertion( "An optically active form of phenylalaninate having L-configuration.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:4136718") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:329084") AnnotationAssertion(Annotation( "Europe PMC") "PMID:21956539") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:4136718") @@ -22626,7 +22510,6 @@ SubClassOf( ObjectSomeValuesFrom( (L-tyrosinate(1-)) AnnotationAssertion( "An optically active form of tyrosinate having L-configuration.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:4784244") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:329373") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:4784244") AnnotationAssertion(Annotation( "JCBN") "L-tyrosinate(1-)") @@ -22649,7 +22532,6 @@ SubClassOf( ObjectSomeValuesFrom( (L-tyrosinate(2-)) AnnotationAssertion( "The L-enantiomer of tyrosinate(2-).") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:5339596") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:364975") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:5339596") AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "L-tyrosinate") @@ -23589,8 +23471,8 @@ SubClassOf( (alpha-amino-acid anion) AnnotationAssertion( "An amino-acid anion obtained by deprotonation of any alpha-amino acid.") -AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid anion") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid anion") AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid anions") AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid anions") AnnotationAssertion( "CHEBI:33558") @@ -23711,7 +23593,6 @@ SubClassOf( ((S)-noradrenaline) AnnotationAssertion( "The S-enantiomer of noradrenaline.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2937999") AnnotationAssertion( "LINCS:LSM-37072") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:2937999") AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "4-[(1S)-2-amino-1-hydroxyethyl]benzene-1,2-diol") @@ -24118,9 +23999,9 @@ SubClassOf( (amino-acid cation) -AnnotationAssertion(Annotation( "ChEBI") "amino-acid cation") AnnotationAssertion( "chebi_ontology") AnnotationAssertion(Annotation( "ChEBI") "amino acid cation") +AnnotationAssertion(Annotation( "ChEBI") "amino acid cations") AnnotationAssertion(Annotation( "ChEBI") "amino-acid cations") AnnotationAssertion( "CHEBI:33703") AnnotationAssertion( ) @@ -24171,6 +24052,7 @@ AnnotationAssertion( "IUPAC") Annotation( ) "amino-acid residue") AnnotationAssertion( "chebi_ontology") AnnotationAssertion(Annotation( "ChEBI") "amino acid residue") +AnnotationAssertion(Annotation( "ChEBI") "amino acid residues") AnnotationAssertion(Annotation( "JCBN") "amino-acid residues") AnnotationAssertion( "CHEBI:33708") AnnotationAssertion( ) @@ -24213,8 +24095,8 @@ SubClassOf( ObjectSomeValuesFrom( (alpha-amino-acid cation) -AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid cation") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid cation") AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid cations") AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid cations") AnnotationAssertion( "CHEBI:33719") @@ -24699,14 +24581,16 @@ AnnotationAssertion( "catalyst") SubClassOf( ) -# Class: (amino acid zwitterion) +# Class: (amino-acid zwitterion) AnnotationAssertion( "The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group.") -AnnotationAssertion(Annotation( "ChEBI") "amino acid zwitterion") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid zwitterion") +AnnotationAssertion(Annotation( "ChEBI") "amino acid zwitterions") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid zwitterions") AnnotationAssertion( "CHEBI:35238") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "amino acid zwitterion") +AnnotationAssertion(rdfs:label "amino-acid zwitterion") SubClassOf( ) # Class: (quaternary ammonium ion) @@ -25856,7 +25740,6 @@ SubClassOf( (farnesane) AnnotationAssertion( "A sesquiterpene that is dodecane substituted by methyl groups at positions 2, 6 and 10.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1719672") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:3891-98-3") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:3891-98-3") AnnotationAssertion(Annotation( "LIPID MAPS") "LIPID_MAPS_instance:LMPR0103010000") @@ -26038,8 +25921,8 @@ SubClassOf( (amino-acid anion) -AnnotationAssertion(Annotation( "ChEBI") "amino-acid anion") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid anion") AnnotationAssertion(Annotation( "ChEBI") "amino acid anions") AnnotationAssertion(Annotation( "ChEBI") "amino-acid anions") AnnotationAssertion( "CHEBI:37022") @@ -26856,7 +26739,6 @@ SubClassOf( ObjectSomeValuesFrom( (D-glucopyranose) AnnotationAssertion( "A glucopyranose having D-configuration.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1281604") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:2280-44-6") AnnotationAssertion( "GlyGen:G15021LG") AnnotationAssertion( "GlyTouCan:G15021LG") @@ -27220,17 +27102,6 @@ AnnotationAssertion( "dihydroxytetrahydrofuran") SubClassOf( ) -# Class: (double-stranded DNA) - -AnnotationAssertion( "KEGG:C00434") -AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Double-stranded DNA") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion(Annotation( "UniProt") "dsDNA") -AnnotationAssertion( "CHEBI:4705") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "double-stranded DNA") -SubClassOf( ) - # Class: (acetate ester) AnnotationAssertion( "Any carboxylic ester where the carboxylic acid component is acetic acid.") @@ -28116,26 +27987,6 @@ AnnotationAssertion( "hydroxylapatite") SubClassOf( ) -# Class: (oxyketone) - -AnnotationAssertion( "A compound with the general formula R2C=O (R=/=H) where one or more of the R groups contains an oxy (-O-) group.") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion(Annotation( "ChEBI") "oxyketones") -AnnotationAssertion( "CHEBI:52395") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "oxyketone") -SubClassOf( ) - -# Class: (alpha-oxyketone) - -AnnotationAssertion( "An oxyketone with the general formula R2C(=O) (R=/=H) where one or more of the R groups contains an oxy (-O-) group and the oxy and carbonyl groups are bonded to the same carbon atom.") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion(Annotation( "ChEBI") "alpha-oxyketones") -AnnotationAssertion( "CHEBI:52396") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "alpha-oxyketone") -SubClassOf( ) - # Class: (galactolipid) AnnotationAssertion( "A glycolipid and which the glyco component is specified as galactosyl.") @@ -29395,7 +29246,6 @@ AnnotationAssertion(Annotation( "ChEBI") "amino-acid anion residues") AnnotationAssertion(Annotation( "ChEBI") "anionic amino acid residue") AnnotationAssertion(Annotation( "ChEBI") "anionic amino acid residues") -AnnotationAssertion(Annotation( "ChEBI") "anionic amino-acid residues") AnnotationAssertion( "CHEBI:64898") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anionic amino-acid residue") @@ -30283,16 +30133,19 @@ AnnotationAssertion( "refrigerant") SubClassOf( ) -# Class: (alpha-amino acid zwitterion) +# Class: (alpha-amino-acid zwitterion) -AnnotationAssertion( "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3.") +AnnotationAssertion( "An amino acid-zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3.") AnnotationAssertion( "CHEBI:83409") AnnotationAssertion(Annotation( "SUBMITTER") "MetaCyc:Alpha-Amino-Acids") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid zwitterion") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid zwitterions") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid zwitterions") AnnotationAssertion(Annotation( "UniProt") "an alpha-amino acid") AnnotationAssertion( "CHEBI:78608") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "alpha-amino acid zwitterion") +AnnotationAssertion(rdfs:label "alpha-amino-acid zwitterion") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -30517,16 +30370,18 @@ AnnotationAssertion( "non-proteinogenic amino acid") SubClassOf( ) -# Class: (amino acid derivative) +# Class: (amino-acid derivative) AnnotationAssertion( "Any derivative of an amino acid resulting from reaction at an amino group, carboxy group, side-chain functional group, or from the replacement of any hydrogen by a heteroatom. The definition normally excludes peptides containing amino acid residues.") AnnotationAssertion( "CHEBI:25359") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid derivative") AnnotationAssertion(Annotation( "ChEBI") "amino acid derivatives") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid derivatives") AnnotationAssertion(Annotation( "ChEBI") "modified amino acids") AnnotationAssertion( "CHEBI:83821") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "amino acid derivative") +AnnotationAssertion(rdfs:label "amino-acid derivative") SubClassOf( ) # Class: (non-proteinogenic L-alpha-amino acid) @@ -48306,29 +48161,6 @@ AnnotationAssertion(rdfs:label "mito EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (negative regulation of transcription by RNA polymerase II) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.") -AnnotationAssertion( "GO:0010553") -AnnotationAssertion( "GO:0045816") -AnnotationAssertion( "down regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "down-regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "downregulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "inhibition of transcription from RNA polymerase II promoter") -AnnotationAssertion( "negative regulation of transcription from Pol II promoter") -AnnotationAssertion( "negative regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "down regulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "down-regulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "downregulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "inhibition of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "negative regulation of gene-specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "negative regulation of global transcription from Pol II promoter") -AnnotationAssertion( "negative regulation of transcription from RNA polymerase II promoter, global") -AnnotationAssertion( "GO:0000122") -AnnotationAssertion(rdfs:label "negative regulation of transcription by RNA polymerase II") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (Golgi membrane) AnnotationAssertion(Annotation( "GOC:mah") "The lipid bilayer surrounding any of the compartments of the Golgi apparatus.") @@ -48585,102 +48417,6 @@ AnnotationAssertion( "cell morphogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (transcription cis-regulatory region binding) - -AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19312"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20791"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-08-10T02:58:18Z") -AnnotationAssertion( "GO:0000975") -AnnotationAssertion( "GO:0000984") -AnnotationAssertion( "GO:0001017") -AnnotationAssertion( "GO:0044212") -AnnotationAssertion( "regulatory region DNA binding") -AnnotationAssertion( "transcription regulatory region sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase regulatory region DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding") -AnnotationAssertion( "eubacterial-type RNA polymerase regulatory region DNA binding") -AnnotationAssertion( "eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "transcription regulatory region DNA binding") -AnnotationAssertion( "GO:0000976") -AnnotationAssertion(rdfs:comment "Note that this term is meant to also capture non-specific binding to regulatory regions. Also, to minimize ambiguity in the use of the word \"promoter\" in GO, we have chosen the phrase \"transcription regulatory region\" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the \"core promoter\" where the basal transcription machinery binds, the \"core promoter proximal region\" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.") -AnnotationAssertion(rdfs:label "transcription cis-regulatory region binding") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (RNA polymerase II transcription regulatory region sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19312"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-08-10T11:05:36Z") -AnnotationAssertion( "GO:0001012") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "RNA polymerase II regulatory region DNA binding") -AnnotationAssertion( "GO:0000977") -AnnotationAssertion(rdfs:comment "To minimize ambiguity in the use of the word \"promoter\" in GO, we have chosen the phrase \"transcription regulatory region\" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the \"core promoter\" where the basal transcription machinery binds, the \"core promoter proximal region\" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.") -AnnotationAssertion(rdfs:label "RNA polymerase II transcription regulatory region sequence-specific DNA binding") -SubClassOf( ) - -# Class: (DNA-binding transcription factor activity, RNA polymerase II-specific) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/15530"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-08-10T02:37:21Z") -AnnotationAssertion( "GO:0000982") -AnnotationAssertion( "GO:0001133") -AnnotationAssertion( "GO:0001200") -AnnotationAssertion( "GO:0001201") -AnnotationAssertion( "GO:0001202") -AnnotationAssertion( "GO:0001203") -AnnotationAssertion( "GO:0003705") -AnnotationAssertion(Annotation( "GOC:vw") "transcription factor") -AnnotationAssertion( "RNA polymerase II transcription factor activity, sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding") -AnnotationAssertion( "sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "RNA polymerase II transcription factor activity, copper ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, copper ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, zinc ion regulated core promoter proximal region sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, zinc ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding") -AnnotationAssertion( "transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding") -AnnotationAssertion( "transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity") -AnnotationAssertion( "GO:0000981") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription factor activity, RNA polymerase II-specific") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (transcription regulatory region nucleic acid binding) - -AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20791"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-10-21T04:08:56Z") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "regulatory region nucleic acid binding") -AnnotationAssertion( "GO:0001067") -AnnotationAssertion(rdfs:label "transcription regulatory region nucleic acid binding") -SubClassOf( ) - # Class: (response to acid chemical) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:rn") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form.") @@ -48694,145 +48430,6 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "response to acid chemical") SubClassOf( ) -# Class: (RNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:txnOH") "The synthesis of an RNA transcript from an RNA template.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22555"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2011-03-14T03:54:46Z") -AnnotationAssertion(Annotation( "GOC:txnOH") "transcription, RNA-dependent") -AnnotationAssertion( "transcription, RNA-templated") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0001172") -AnnotationAssertion(rdfs:label "RNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (DNA-binding transcription activator activity) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16736"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2011-01-26T03:09:27Z") -AnnotationAssertion( "GO:0001140") -AnnotationAssertion( "GO:0001215") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional activator activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "GO:0001216") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription activator activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (DNA-binding transcription repressor activity) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16736"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2011-01-26T03:15:45Z") -AnnotationAssertion( "GO:0001141") -AnnotationAssertion( "GO:0001218") -AnnotationAssertion( "GO:0001219") -AnnotationAssertion( "GO:0001220") -AnnotationAssertion( "bacterial-type DNA binding transcription repressor activity") -AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, cadmium ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, copper ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding") -AnnotationAssertion( "cadmium ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "copper ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") -AnnotationAssertion( "transcriptional repressor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0001217") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription repressor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (DNA-binding transcription repressor activity, RNA polymerase II-specific) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets transcribed by RNA polymerase II.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-10-26T03:56:48Z") -AnnotationAssertion( "GO:0001078") -AnnotationAssertion( "GO:0001206") -AnnotationAssertion( "GO:0001210") -AnnotationAssertion( "GO:0001214") -AnnotationAssertion( "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "RNA polymerase II transcriptional repressor activity, metal ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcriptional repressor activity, metal ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "distal enhancer DNA-binding transcription repressor activity, RNA polymerase II-specific") -AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific") -AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding") -AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "transcriptional repressor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0001227") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription repressor activity, RNA polymerase II-specific") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (DNA-binding transcription activator activity, RNA polymerase II-specific) - -AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:txnOH-2018") Annotation( "PMID:20737563") Annotation( "PMID:27145859") "A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets transcribed by RNA polymerase II.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2012-01-26T03:10:20Z") -AnnotationAssertion( "GO:0001077") -AnnotationAssertion( "GO:0001205") -AnnotationAssertion( "GO:0001209") -AnnotationAssertion( "GO:0001211") -AnnotationAssertion( "GO:0001212") -AnnotationAssertion( "GO:0001213") -AnnotationAssertion( "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, copper ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, metal ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, metal ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, zinc ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, zinc ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "distal enhancer DNA-binding transcription activator activity, RNA polymerase II-specific") -AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific") -AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding") -AnnotationAssertion( "transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding") -AnnotationAssertion( "transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "transcriptional activator activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0001228") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription activator activity, RNA polymerase II-specific") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - # Class: (skeletal system development) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:jid") Annotation( "GOC:tb") "The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).") @@ -49914,7 +49511,7 @@ EquivalentClasses( ObjectIntersection # Class: (serotonin secretion) -AnnotationAssertion(Annotation( "GOC:ef") Annotation( "ISBN:0198506732") Annotation( "ISBN:0781735149") "The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells.") +AnnotationAssertion(Annotation( "GOC:ef") Annotation( "ISBN:0198506732") Annotation( "ISBN:0781735149") "The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesized in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells.") AnnotationAssertion( "5-HT secretion") AnnotationAssertion( "5-hydroxytryptamine secretion") AnnotationAssertion( "biological_process") @@ -53094,6 +52691,7 @@ EquivalentClasses( ObjectIntersection # Class: (negative regulation of proteolysis associated with antigen processing and presentation) AnnotationAssertion(Annotation( "GOC:add") "Any process that stops, prevents, or reduces the frequency, rate, or extent of proteolysis associated with antigen processing and presentation.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "down regulation of proteolysis associated with antigen processing and presentation") AnnotationAssertion( "down-regulation of proteolysis associated with antigen processing and presentation") AnnotationAssertion( "downregulation of proteolysis associated with antigen processing and presentation") @@ -53102,7 +52700,7 @@ AnnotationAssertion( "GO:0002629") AnnotationAssertion(rdfs:label "negative regulation of proteolysis associated with antigen processing and presentation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -53118,7 +52716,7 @@ AnnotationAssertion( "GO:0002630") AnnotationAssertion(rdfs:label "positive regulation of proteolysis associated with antigen processing and presentation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -56286,6 +55884,7 @@ SubClassOf( ObjectSomeValuesFrom( (heart rudiment morphogenesis) AnnotationAssertion(Annotation( "GOC:mtg_heart") "The process in which the anatomical structures of the heart rudiment are generated and organized.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22938"^^xsd:anyURI) AnnotationAssertion( "dph") AnnotationAssertion( "2009-10-27T08:38:04Z") AnnotationAssertion(Annotation( "GOC:mtg_heart") "heart cone morphogenesis") @@ -56295,6 +55894,7 @@ AnnotationAssertion(rdfs:label "hear EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (heart rudiment formation) @@ -57105,75 +56705,6 @@ AnnotationAssertion( "chromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (double-stranded DNA binding) - -AnnotationAssertion(Annotation( "GOC:elh") Annotation( "GOC:vw") "Binding to double-stranded DNA.") -AnnotationAssertion(Annotation( "GOC:elh") "dsDNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0003690") -AnnotationAssertion(rdfs:label "double-stranded DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (DNA-binding transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/15704"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-10-21T04:37:54Z") -AnnotationAssertion( "GO:0000130") -AnnotationAssertion( "GO:0001071") -AnnotationAssertion( "GO:0001130") -AnnotationAssertion( "GO:0001131") -AnnotationAssertion( "GO:0001151") -AnnotationAssertion( "GO:0001199") -AnnotationAssertion( "GO:0001204") -AnnotationAssertion( "nucleic acid binding transcription factor activity") -AnnotationAssertion( "transcription factor activity") -AnnotationAssertion( "DNA binding transcription factor activity") -AnnotationAssertion( "gene-specific transcription factor activity") -AnnotationAssertion( "sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "bacterial-type DNA binding transcription factor activity") -AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "bacterial-type RNA polymerase transcription enhancer sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity") -AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") -AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase transcription enhancer sequence-specific binding") -AnnotationAssertion( "transcription factor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0003700") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Usage guidance: Most DNA-binding transcription factors do not have enzymatic activity. The presence of specific DNA-binding domains known to be present in DNA-binding transcription factors (HOX, GATA etc) should be used to help decide whether a protein is a DNA binding transcription factor or a coregulator. If a protein has an enzymatic activity (for example, ubiquitin ligase, histone acetyl transferase) and no known DNA binding domain, consider annotating to GO:0003712 transcription coregulator activity. Special care should be taken with proteins containing zinc fingers, Myb/SANT and ARID domains, since only a subset of proteins containing these domains directly and selectively bind to regulatory DNA motifs in cis-regulatory regions.") -AnnotationAssertion(rdfs:label "DNA-binding transcription factor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (nuclear steroid receptor activity) - -AnnotationAssertion(Annotation( "GOC:signaling") Annotation( "PMID:14708019") "Combining with a steroid hormone and transmitting the signal within the cell to initiate a change in cell activity or function.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16717"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26957"^^xsd:anyURI) -AnnotationAssertion( "steroid hormone receptor activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0003707") -AnnotationAssertion(rdfs:label "nuclear steroid receptor activity") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (RNA binding) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:mah") "Binding to an RNA molecule or a portion thereof.") @@ -57668,6 +57199,15 @@ AnnotationAssertion(Annotation(rdfs:label "SH pentamer is phosphorylated") "Reactome:R-HSA-983703") AnnotationAssertion(Annotation(rdfs:label "SYK autophosphorylates at the activated BCR") "Reactome:R-HSA-983707") AnnotationAssertion(Annotation(rdfs:label "LYN, FYN, BLK phosphorylate ITAMs of Ig-alpha (CD79A) and Ig-beta (CD79B)") "Reactome:R-HSA-983709") +AnnotationAssertion(Annotation(rdfs:label "ABL1 phosphorylates PPARG2") "Reactome:R-HSA-9841924") +AnnotationAssertion(Annotation(rdfs:label "Autophosphorylation of LTK dimer:ALKAL1,2") "Reactome:R-HSA-9842648") +AnnotationAssertion(Annotation(rdfs:label "Active LTK receptor phosphorylates SHC1") "Reactome:R-HSA-9842651") +AnnotationAssertion(Annotation(rdfs:label "Active LTK phosphorylates IRS1") "Reactome:R-HSA-9842666") +AnnotationAssertion(Annotation(rdfs:label "CLIP1-LTK fusion autophosphorylates") "Reactome:R-HSA-9842667") +AnnotationAssertion(Annotation(rdfs:label "Phosphorylation of KDR (VEGFR2) and FLT4 (VEGFR3) and PECAM1 in PECAM1:CDH5:KDR:FLT4:CTNNB1") "Reactome:R-HSA-9860500") +AnnotationAssertion(Annotation(rdfs:label "p-T816-PKN2 phosphorylates AKT1 on serine-308") "Reactome:R-HSA-9860759") +AnnotationAssertion(Annotation(rdfs:label "p-Y397-PTK2 (FAK) phosphorylates CHUK (IKKA)") "Reactome:R-HSA-9861469") +AnnotationAssertion(Annotation(rdfs:label "p-Y393-ABL1 phosphorylates tyrosine-407 of YAP1") "Reactome:R-HSA-9865196") AnnotationAssertion( "protein-tyrosine kinase activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0004713") @@ -57735,65 +57275,6 @@ AnnotationAssertion(rdfs:label "tran SubClassOf( ) SubClassOf( ) -# Class: (nuclear receptor activity) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") Annotation( "PMID:23457262") "A DNA-binding transcription factor activity regulated by binding to a ligand that modulates the transcription of specific gene sets transcribed by RNA polymerase II. Nuclear receptor ligands are usually lipid-based (such as a steroid hormone) and the binding of the ligand to its receptor often occurs in the cytosol, which leads to its translocation to the nucleus.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19518"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "GO:0003708") -AnnotationAssertion( "GO:0004880") -AnnotationAssertion( "GO:0004882") -AnnotationAssertion( "GO:0004884") -AnnotationAssertion( "GO:0004886") -AnnotationAssertion( "GO:0004887") -AnnotationAssertion( "GO:0008434") -AnnotationAssertion( "GO:0038050") -AnnotationAssertion( "GO:0038051") -AnnotationAssertion( "GO:0038052") -AnnotationAssertion( "RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding") -AnnotationAssertion( "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion(Annotation( "Wikipedia:Calcitriol") "1,25-(OH)2D3 receptor activity") -AnnotationAssertion( "9-cis retinoic acid receptor activity") -AnnotationAssertion( "RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, glucocorticoid-activated sequence-specific DNA binding") -AnnotationAssertion( "RXR") -AnnotationAssertion( "androgen receptor activity") -AnnotationAssertion( "calcitriol receptor activity") -AnnotationAssertion( "ecdysteroid hormone receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") "estrogen nuclear receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") "glucocorticoid receptor activity") -AnnotationAssertion( "juvenile hormone receptor activity") -AnnotationAssertion( "nuclear hormone receptor") -AnnotationAssertion( "retinoic acid receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") "retinoid-X receptor activity") -AnnotationAssertion( "thyroid hormone receptor activity") -AnnotationAssertion( "vitamin A receptor activity") -AnnotationAssertion( "vitamin D receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") Annotation( "Wikipedia:Calcitriol_receptor") "vitamin D3 receptor activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion(Annotation( "GOC:bf") "ligand-dependent nuclear receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") "ligand-dependent transcription factor activity") -AnnotationAssertion( "GO:0004879") -AnnotationAssertion(rdfs:comment "Usage guidance: Nuclear receptors are a protein family defined by the presence of a C4-type zinc finger DNA-binding domain and a ligand binding domain. For nuclear receptors, the DNA binding motif is most often referred to as a response element. GO:0004879 is intended for annotation of nuclear receptors that regulate transcription by binding directly to DNA. When the nuclear receptor functions by binding to other transcription factors or transcription factor complexes, consider instead annotating to 'GO:0030374 ; nuclear receptor transcription coactivator activity' or GO:0140536 ; nuclear corepressor activity.") -AnnotationAssertion(rdfs:label "nuclear receptor activity") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (nuclear glucocorticoid receptor activity) - -AnnotationAssertion(Annotation( "GOC:signaling") Annotation( "PMID:17689856") Annotation( "PMID:20920967") "Combining with a glucocorticoid and transmitting the signal within the cell trigger a change in cell activity or function.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16717"^^xsd:anyURI) -AnnotationAssertion( "glucocorticoid receptor activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0004883") -AnnotationAssertion(rdfs:label "nuclear glucocorticoid receptor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (transmembrane signaling receptor activity) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "Wikipedia:Transmembrane_receptor") "Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.") @@ -57848,6 +57329,7 @@ AnnotationAssertion( "Reactome:R-HSA-114552") AnnotationAssertion(Annotation(rdfs:label "Thrombin-activated PARs activate Gq") "Reactome:R-HSA-114558") AnnotationAssertion(Annotation(rdfs:label "The high affinity receptor complex binds to G-protein") "Reactome:R-HSA-167408") +AnnotationAssertion(Annotation(rdfs:label "GLP1R:GLP1 activates G(s)") "Reactome:R-HSA-381706") AnnotationAssertion( "Wikipedia:GPCR") AnnotationAssertion( "G protein coupled receptor activity") AnnotationAssertion( "G protein linked receptor activity") @@ -58126,9 +57608,9 @@ SubClassOf( ObjectSomeValuesFrom( (L-glutamate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "L-glutamate transporter activity") AnnotationAssertion( "glutamate transmembrane transporter activity") -AnnotationAssertion(Annotation( "skos:broadMatch") "RHEA:66336") AnnotationAssertion(Annotation(rdfs:label "L-Glutamate loading of synaptic vesicle") "Reactome:R-HSA-210444") AnnotationAssertion(Annotation(rdfs:label "SLC17A6,7,8 exchange cytosolic L-Glu for synaptic vesicle H+") "Reactome:R-HSA-428052") AnnotationAssertion(Annotation(rdfs:label "Defective SLC17A8 does not exchange cytosolic L-Glu for synaptic vesicle H+") "Reactome:R-HSA-5624256") @@ -58140,22 +57622,20 @@ AnnotationAssertion(rdfs:label "L-gl EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (phosphate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:mtg_transport") "Enables the transfer of phosphate ions from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27121"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "GO:0005317") AnnotationAssertion( "GO:1901677") -AnnotationAssertion( "RHEA:32823") AnnotationAssertion( "inorganic phosphate transmembrane transporter activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0005315") AnnotationAssertion(rdfs:label "phosphate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (lipid transporter activity) @@ -58351,6 +57831,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:go_curators") "Binding to a protein.") AnnotationAssertion( "GO:0001948") AnnotationAssertion( "GO:0045308") +AnnotationAssertion(Annotation(rdfs:label "Intermediate II binds CYC1, UQCRC1, UQCRC2, UQCRH") "Reactome:R-HSA-9866132") AnnotationAssertion( "protein amino acid binding") AnnotationAssertion( "glycoprotein binding") AnnotationAssertion( "molecular_function") @@ -58677,22 +58158,6 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (transcription regulator complex) - -AnnotationAssertion(Annotation( "GOC:jl") "A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.") -AnnotationAssertion( "jl") -AnnotationAssertion( "2013-08-28T12:11:37Z") -AnnotationAssertion( "GO:0044797") -AnnotationAssertion( "GO:0044798") -AnnotationAssertion( "cellular_component") -AnnotationAssertion( "cytoplasmic transcription factor complex") -AnnotationAssertion( "nuclear transcription factor complex") -AnnotationAssertion( "transcription factor complex") -AnnotationAssertion( "GO:0005667") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transcription regulator complex") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (chromosome) AnnotationAssertion(Annotation( "ISBN:0198547684") "A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.") @@ -59309,6 +58774,7 @@ SubClassOf( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28527"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28968"^^xsd:anyURI) AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:GLYCOGENSYNTH-PWY") AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:PWY-5067") AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:PWY-7900") @@ -59320,8 +58786,6 @@ AnnotationAssertion( "GO:0005978") AnnotationAssertion(rdfs:label "glycogen biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) # Class: (regulation of glycogen biosynthetic process) @@ -59543,20 +59007,18 @@ AnnotationAssertion(rdfs:label "alco EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (cellular aldehyde metabolic process) +# Class: (aldehyde metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "aldehyde metabolism") AnnotationAssertion( "alkanal metabolic process") AnnotationAssertion( "alkanal metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006081") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular aldehyde metabolic process") +AnnotationAssertion(rdfs:label "aldehyde metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) # Class: (organic acid metabolic process) @@ -59568,7 +59030,6 @@ AnnotationAssertion( "organic acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (acetate metabolic process) @@ -59602,12 +59063,15 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "generation of precursor metabolites and energy") -SubClassOf( ) +SubClassOf( ) # Class: (gluconeogenesis) AnnotationAssertion(Annotation( "MetaCyc:GLUCONEO-PWY") "The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.") -AnnotationAssertion( "MetaCyc:GLUCONEO-PWY") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28953"^^xsd:anyURI) +AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:GLUCONEO-PWY") +AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:PWY-6142") +AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:PWY66-399") AnnotationAssertion( "Wikipedia:Gluconeogenesis") AnnotationAssertion( "glucose biosynthesis") AnnotationAssertion( "glucose biosynthetic process") @@ -59900,96 +59364,6 @@ AnnotationAssertion( "chromatin organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (DNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:txnOH") "The synthesis of an RNA transcript from a DNA template.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/14854"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16737"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22258"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22555"^^xsd:anyURI) -AnnotationAssertion( "GO:0001121") -AnnotationAssertion( "GO:0006350") -AnnotationAssertion( "GO:0061018") -AnnotationAssertion( "GO:0061022") -AnnotationAssertion( "cellular transcription") -AnnotationAssertion( "transcription") -AnnotationAssertion( "Wikipedia:Transcription_(genetics)") -AnnotationAssertion( "DNA-dependent transcription") -AnnotationAssertion(Annotation( "GOC:txnOH") "transcription, DNA-dependent") -AnnotationAssertion( "transcription, DNA-templated") -AnnotationAssertion( "bacterial transcription") -AnnotationAssertion( "transcription from bacterial-type RNA polymerase promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0006351") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "DNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (regulation of DNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/25256"^^xsd:anyURI) -AnnotationAssertion( "GO:0032583") -AnnotationAssertion( "GO:0045449") -AnnotationAssertion( "GO:0061019") -AnnotationAssertion( "transcriptional control") -AnnotationAssertion( "regulation of cellular transcription, DNA-dependent") -AnnotationAssertion(Annotation( "GOC:txnOH") "regulation of transcription, DNA-dependent") -AnnotationAssertion( "regulation of transcription, DNA-templated") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "regulation of gene-specific transcription") -AnnotationAssertion( "GO:0006355") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of DNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (regulation of transcription by RNA polymerase II) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.") -AnnotationAssertion( "GO:0006358") -AnnotationAssertion( "GO:0010551") -AnnotationAssertion( "regulation of transcription from Pol II promoter") -AnnotationAssertion( "regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "global transcription regulation from Pol II promoter") -AnnotationAssertion( "regulation of gene-specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "regulation of global transcription from Pol II promoter") -AnnotationAssertion( "regulation of transcription from RNA polymerase II promoter, global") -AnnotationAssertion( "GO:0006357") -AnnotationAssertion(rdfs:label "regulation of transcription by RNA polymerase II") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (transcription by RNA polymerase II) - -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:txnOH") Annotation( "ISBN:0321000382") "The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/14854"^^xsd:anyURI) -AnnotationAssertion( "GO:0032568") -AnnotationAssertion( "GO:0032569") -AnnotationAssertion( "transcription from Pol II promoter") -AnnotationAssertion( "transcription from RNA polymerase II promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "RNA polymerase II transcription factor activity") -AnnotationAssertion( "gene-specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "general transcription from RNA polymerase II promoter") -AnnotationAssertion(Annotation( "GOC:mah") "specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "GO:0006366") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transcription by RNA polymerase II") -SubClassOf( ) - # Class: (RNA catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.") @@ -60082,7 +59456,7 @@ AnnotationAssertion( "GO:0006413") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "translational initiation") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -60242,17 +59616,15 @@ AnnotationAssertion(rdfs:label "amin EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (regulation of cellular amino acid metabolic process) +# Class: (regulation of amino acid metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "regulation of amino acid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006521") -AnnotationAssertion(rdfs:label "regulation of cellular amino acid metabolic process") +AnnotationAssertion(rdfs:label "regulation of amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) # Class: (glutamate metabolic process) @@ -60363,23 +59735,23 @@ AnnotationAssertion( "tyrosine catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (cellular modified amino acid metabolic process) +# Class: (modified amino acid metabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving compounds derived from amino acids, organic acids containing one or more amino substituents.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "amino acid derivative metabolic process") AnnotationAssertion( "cellular amino acid derivative metabolic process") AnnotationAssertion( "cellular amino acid derivative metabolism") +AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid metabolic process") AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid metabolism") -AnnotationAssertion(Annotation( "GOC:mah") "modified amino acid metabolic process") AnnotationAssertion(Annotation( "GOC:mah") "modified amino acid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006575") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular modified amino acid metabolic process") +AnnotationAssertion(rdfs:label "modified amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (biogenic amine metabolic process) @@ -60512,13 +59884,13 @@ SubClassOf( (fatty acid metabolic process) AnnotationAssertion(Annotation( "ISBN:0198547684") "The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "Wikipedia:Fatty_acid_metabolism") AnnotationAssertion( "fatty acid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006631") AnnotationAssertion(rdfs:label "fatty acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (fatty acid biosynthetic process) @@ -60541,21 +59913,22 @@ EquivalentClasses( ObjectIntersection # Class: (membrane lipid metabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving membrane lipids, any lipid found in or associated with a biological membrane.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "membrane lipid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006643") AnnotationAssertion(rdfs:label "membrane lipid metabolic process") -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (phospholipid metabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "phospholipid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006644") AnnotationAssertion(rdfs:label "phospholipid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (glycolipid metabolic process) @@ -60696,7 +60069,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ) -SubClassOf( ) # Class: (progesterone biosynthetic process) @@ -60827,6 +60199,7 @@ SubClassOf( (isoprenoid metabolic process) AnnotationAssertion(Annotation( "ISBN:0198547684") "The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "GO:0016096") AnnotationAssertion( "isoprenoid metabolism") AnnotationAssertion( "polyisoprenoid metabolic process") @@ -60837,7 +60210,6 @@ AnnotationAssertion( "GO:0006720") AnnotationAssertion(rdfs:label "isoprenoid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (terpenoid metabolic process) @@ -60937,7 +60309,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sulfur compound metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (phosphorus metabolic process) @@ -60948,7 +60319,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "phosphorus metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (phosphate-containing compound metabolic process) @@ -60975,7 +60345,6 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "xenobiotic metabolic process") -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (transport) @@ -63865,19 +63234,16 @@ SubClassOf( (metabolic process) -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198547684") "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.") +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198547684") "A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28932"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-10-17T15:46:40Z") AnnotationAssertion( "GO:0044236") AnnotationAssertion( "GO:0044710") AnnotationAssertion( "Wikipedia:Metabolism") AnnotationAssertion( "metabolism") -AnnotationAssertion( "metabolic process resulting in cell growth") -AnnotationAssertion( "metabolism resulting in cell growth") -AnnotationAssertion( "multicellular organism metabolic process") AnnotationAssertion( "biological_process") -AnnotationAssertion( "single-organism metabolic process") AnnotationAssertion( "GO:0008152") AnnotationAssertion( ) AnnotationAssertion( ) @@ -63888,7 +63254,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.") AnnotationAssertion(rdfs:label "metabolic process") -SubClassOf( ) +SubClassOf( ) DisjointClasses( ) DisjointClasses( ) @@ -64176,11 +63542,11 @@ AnnotationAssertion( "GO:0008299") AnnotationAssertion(rdfs:label "isoprenoid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (isoprenoid catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "GO:0016097") AnnotationAssertion( "isoprenoid breakdown") AnnotationAssertion( "isoprenoid catabolism") @@ -64195,7 +63561,6 @@ AnnotationAssertion( "GO:0008300") AnnotationAssertion(rdfs:label "isoprenoid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (associative learning) @@ -64560,18 +63925,20 @@ EquivalentClasses( ObjectIntersection # Class: (catabolic process) -AnnotationAssertion(Annotation( "ISBN:0198547684") "The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.") +AnnotationAssertion(Annotation( "ISBN:0198547684") "A cellular process consisting of the biochemical pathways by which a living organism breaks down substances. This includes the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28921"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28932"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-10-17T15:52:35Z") AnnotationAssertion( "GO:0044243") AnnotationAssertion( "GO:0044712") AnnotationAssertion( "Wikipedia:Catabolism") -AnnotationAssertion( "breakdown") +AnnotationAssertion( "breakdown of chemical") +AnnotationAssertion( "breakdown of molecule") +AnnotationAssertion( "breakdown of substance") AnnotationAssertion( "catabolism") AnnotationAssertion( "degradation") -AnnotationAssertion( "multicellular organismal catabolic process") AnnotationAssertion( "biological_process") -AnnotationAssertion( "single-organism catabolic process") AnnotationAssertion( "GO:0009056") AnnotationAssertion( ) AnnotationAssertion( ) @@ -64601,7 +63968,8 @@ EquivalentClasses( ObjectIntersection # Class: (biosynthetic process) -AnnotationAssertion(Annotation( "GOC:curators") Annotation( "ISBN:0198547684") "The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.") +AnnotationAssertion(Annotation( "GOC:curators") Annotation( "ISBN:0198547684") "A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28932"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-10-17T15:52:18Z") AnnotationAssertion( "GO:0044274") @@ -64642,11 +64010,11 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "macromolecule biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (fatty acid catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "Wikipedia:Fatty_acid_degradation") AnnotationAssertion( "fatty acid breakdown") AnnotationAssertion( "fatty acid catabolism") @@ -64655,7 +64023,6 @@ AnnotationAssertion( "GO:0009062") AnnotationAssertion(rdfs:label "fatty acid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (amino acid catabolic process) @@ -65347,6 +64714,7 @@ SubClassOf( (phospholipid catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "phospholipid breakdown") AnnotationAssertion( "phospholipid catabolism") AnnotationAssertion( "phospholipid degradation") @@ -65354,7 +64722,6 @@ AnnotationAssertion( "GO:0009395") AnnotationAssertion(rdfs:label "phospholipid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (response to water deprivation) @@ -66592,14 +65959,14 @@ AnnotationAssertion(rdfs:label "regu EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (regulation of cellular ketone metabolic process) +# Class: (regulation of ketone metabolic process) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "Any process that modulates the chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0010565") -AnnotationAssertion(rdfs:label "regulation of cellular ketone metabolic process") +AnnotationAssertion(rdfs:label "regulation of ketone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (regulation of ketone biosynthetic process) @@ -66608,8 +65975,8 @@ AnnotationAssertion( "GO:0010566") AnnotationAssertion(rdfs:label "regulation of ketone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) # Class: (regulation of ketone catabolic process) @@ -68739,9 +68106,10 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-1222516") AnnotationAssertion(Annotation(rdfs:label "Enzyme-bound ATP is released") "Reactome:R-HSA-164834") AnnotationAssertion(Annotation(rdfs:label "Virion-associated M2 protein mediated ion infusion") "Reactome:R-HSA-168313") -AnnotationAssertion(Annotation(rdfs:label "Protons are translocated from the intermembrane space to the matrix") "Reactome:R-HSA-170026") +AnnotationAssertion(Annotation(rdfs:label "UCP1 imports a proton") "Reactome:R-HSA-170026") AnnotationAssertion(Annotation(rdfs:label "Endosome acidification") "Reactome:R-HSA-74723") AnnotationAssertion(Annotation(rdfs:label "Acidification of Tf:TfR1 containing endosome") "Reactome:R-HSA-917841") +AnnotationAssertion(Annotation(rdfs:label "AAC1 imports a proton") "Reactome:R-HSA-9864415") AnnotationAssertion( "hydrogen ion transmembrane transporter activity") AnnotationAssertion( "proton transporter activity") AnnotationAssertion( "molecular_function") @@ -68753,9 +68121,9 @@ SubClassOf(Annotation( "GO_ # Class: (potassium ion transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of potassium ions (K+) from one side of a membrane to the other.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "GO:0015388") AnnotationAssertion( "GO:0022817") -AnnotationAssertion( "RHEA:29463") AnnotationAssertion( "potassium transporter activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "potassium uptake permease activity") @@ -68764,35 +68132,32 @@ AnnotationAssertion( "potassium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (sodium ion transmembrane transporter activity) -AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:ai") Annotation( "RHEA:34963") "Enables the transfer of sodium ions (Na+) from one side of a membrane to the other.") +AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:ai") "Enables the transfer of sodium ions (Na+) from one side of a membrane to the other.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24076"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "GO:0022816") -AnnotationAssertion( "RHEA:34963") AnnotationAssertion( "sodium transporter activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0015081") AnnotationAssertion(rdfs:label "sodium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (calcium ion transmembrane transporter activity) -AnnotationAssertion(Annotation( "GOC:dgf") Annotation( "RHEA:29671") "Enables the transfer of calcium (Ca) ions from one side of a membrane to the other.") +AnnotationAssertion(Annotation( "GOC:dgf") "Enables the transfer of calcium (Ca) ions from one side of a membrane to the other.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26941"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "MetaCyc:TRANS-RXN-144") -AnnotationAssertion( "RHEA:29671") AnnotationAssertion(Annotation(rdfs:label "CatSper Channel Mediated Calcium Transport") "Reactome:R-HSA-2534359") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0015085") AnnotationAssertion(rdfs:label "calcium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (organic cation transmembrane transporter activity) @@ -68826,7 +68191,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:ai") "Enables the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26780"^^xsd:anyURI) -AnnotationAssertion( "RHEA:28695") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion(Annotation(rdfs:label "BESTs transport cytosolic HCO3- to extracellular region") "Reactome:R-HSA-2752067") AnnotationAssertion( "hydrogencarbonate transmembrane transporter activity") AnnotationAssertion( "molecular_function") @@ -68834,12 +68199,11 @@ AnnotationAssertion( "bicarbonate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (sulfate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other.") -AnnotationAssertion( "RHEA:34983") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion(Annotation(rdfs:label "Defective SLC26A2 does not cotransport extracellular SO4(2-), H+ to cytosol") "Reactome:R-HSA-3560789") AnnotationAssertion(Annotation(rdfs:label "SLC26A1,2 cotransport SO4(2-), H+ from extracellular region to cytosol") "Reactome:R-HSA-427555") AnnotationAssertion(Annotation(rdfs:label "SLC26A11 transports SO4(2-) from extracellular region to cytosol") "Reactome:R-HSA-8875871") @@ -68850,7 +68214,6 @@ AnnotationAssertion( "sulfate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (acetate transmembrane transporter activity) @@ -69017,7 +68380,7 @@ SubClassOf(Annotation( "GO_ AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transfer of acidic amino acids from one side of a membrane to the other. Acidic amino acids have side chains with a negative charge at pH 7.3.") AnnotationAssertion( "acidic amino acid transporter activity") -AnnotationAssertion(Annotation(rdfs:label "SLC25A12,13 exchange cytosolic L-Glu for mitochondrial matrix L-Asp") "Reactome:R-HSA-372448") +AnnotationAssertion(Annotation(rdfs:label "SLC25A12,13 exchange L-Glu and L-Asp") "Reactome:R-HSA-372448") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0015172") AnnotationAssertion(rdfs:label "acidic amino acid transmembrane transporter activity") @@ -69154,6 +68517,8 @@ AnnotationAssertion( "fatty-acyl group transporter activity") AnnotationAssertion(Annotation(rdfs:label "Defective SLC27A4 does not transport LCFAs from extracellular region to cytosol") "Reactome:R-HSA-5627891") AnnotationAssertion(Annotation(rdfs:label "SLC27A1,4,6 transport LCFAs from extracellular region to cytosol") "Reactome:R-HSA-879585") +AnnotationAssertion(Annotation(rdfs:label "oxo-DHAs translocate from cytosol to extracellular region") "Reactome:R-HSA-9032315") +AnnotationAssertion(Annotation(rdfs:label "oxo-DPAn-3s translocate from cytosol to extracellular region") "Reactome:R-HSA-9032323") AnnotationAssertion( "fatty acyl transporter activity") AnnotationAssertion( "peroxisomal fatty acyl transporter") AnnotationAssertion( "molecular_function") @@ -69226,9 +68591,9 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:ai") "Enables the transfer of formate from one side of a membrane to the other. Formate is also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26941"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "GO:0015659") AnnotationAssertion( "MetaCyc:TRANS-RXN-1") -AnnotationAssertion( "RHEA:29679") AnnotationAssertion( "formate uptake permease activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "formate uptake transmembrane transporter activity") @@ -69236,7 +68601,6 @@ AnnotationAssertion( "formate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (propionate transmembrane transporter activity) @@ -70006,7 +69370,6 @@ AnnotationAssertion( "organic acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (organic acid catabolic process) @@ -70619,6 +69982,7 @@ SubClassOf( "GOC:bf") Annotation( "GOC:fj") Annotation( "GOC:mah") "Combining with acetylcholine and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.") AnnotationAssertion( "GO:0004981") +AnnotationAssertion(Annotation(rdfs:label "Acetylcholine binds Muscarinic Acetylcholine Receptor M3") "Reactome:R-HSA-400012") AnnotationAssertion( "G protein coupled acetylcholine receptor activity") AnnotationAssertion( "G-protein coupled acetylcholine receptor activity") AnnotationAssertion(Annotation( "GOC:bf") "acetylcholine receptor activity, G-protein coupled") @@ -70659,24 +70023,6 @@ AnnotationAssertion(rdfs:label "pept EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (transcription repressor complex) - -AnnotationAssertion(Annotation( "GOC:mah") "A protein complex that possesses activity that prevents or downregulates transcription.") -AnnotationAssertion( "tb") -AnnotationAssertion( "2014-05-09T13:23:51Z") -AnnotationAssertion( "GO:0090568") -AnnotationAssertion( "GO:0090569") -AnnotationAssertion(Annotation( "GOC:bhm") "transcription factor inhibitor complex") -AnnotationAssertion( "transcriptional repressor complex") -AnnotationAssertion( "cellular_component") -AnnotationAssertion( "cytoplasmic transcriptional repressor complex") -AnnotationAssertion( "nuclear transcriptional repressor complex") -AnnotationAssertion( "GO:0017053") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transcription repressor complex") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (purine nucleotide binding) AnnotationAssertion(Annotation( "GOC:ai") "Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate.") @@ -76457,29 +75803,6 @@ SubClassOf( ) SubClassOf( ) -# Class: (nuclear receptor-mediated steroid hormone signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:signaling") "A nuclear receptor-mediated signaling pathway initiated by a steroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.") -AnnotationAssertion(Annotation( "GOC:bf") "steroid hormone receptor signaling pathway") -AnnotationAssertion(Annotation( "GOC:bf") "steroid hormone receptor signalling pathway") -AnnotationAssertion( "intracellular steroid hormone receptor signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0030518") -AnnotationAssertion(rdfs:label "nuclear receptor-mediated steroid hormone signaling pathway") -SubClassOf( ) -SubClassOf( ) - -# Class: (intracellular receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:bf") Annotation( "GOC:mah") "The series of molecular signals initiated by a ligand binding to a receptor located within a cell.") -AnnotationAssertion( "intracellular receptor mediated signaling pathway") -AnnotationAssertion( "intracellular receptor-mediated signaling pathway") -AnnotationAssertion( "intracellular receptor-mediated signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0030522") -AnnotationAssertion(rdfs:label "intracellular receptor signaling pathway") -SubClassOf( ) - # Class: (male genitalia development) AnnotationAssertion(Annotation( "GOC:ems") Annotation( "ISBN:0140512888") "The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure.") @@ -77624,180 +76947,6 @@ AnnotationAssertion( "positive regulation of pseudopodium assembly") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of cellular metabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "regulation of cellular metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031323") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "regulation of cellular metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) - -# Class: (negative regulation of cellular metabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "down regulation of cellular metabolic process") -AnnotationAssertion( "down-regulation of cellular metabolic process") -AnnotationAssertion( "downregulation of cellular metabolic process") -AnnotationAssertion( "negative regulation of cellular metabolism") -AnnotationAssertion( "inhibition of cellular metabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031324") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "negative regulation of cellular metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (positive regulation of cellular metabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "positive regulation of cellular metabolism") -AnnotationAssertion( "up regulation of cellular metabolic process") -AnnotationAssertion( "up-regulation of cellular metabolic process") -AnnotationAssertion( "upregulation of cellular metabolic process") -AnnotationAssertion( "activation of cellular metabolic process") -AnnotationAssertion( "stimulation of cellular metabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031325") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "positive regulation of cellular metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (regulation of cellular biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "regulation of cellular anabolism") -AnnotationAssertion( "regulation of cellular biosynthesis") -AnnotationAssertion( "regulation of cellular formation") -AnnotationAssertion( "regulation of cellular synthesis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031326") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "regulation of cellular biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) - -# Class: (negative regulation of cellular biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "down regulation of cellular biosynthetic process") -AnnotationAssertion( "down-regulation of cellular biosynthetic process") -AnnotationAssertion( "downregulation of cellular biosynthetic process") -AnnotationAssertion( "negative regulation of cellular anabolism") -AnnotationAssertion( "negative regulation of cellular biosynthesis") -AnnotationAssertion( "negative regulation of cellular formation") -AnnotationAssertion( "negative regulation of cellular synthesis") -AnnotationAssertion( "inhibition of cellular biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031327") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "negative regulation of cellular biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (positive regulation of cellular biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "positive regulation of cellular anabolism") -AnnotationAssertion( "positive regulation of cellular biosynthesis") -AnnotationAssertion( "positive regulation of cellular formation") -AnnotationAssertion( "positive regulation of cellular synthesis") -AnnotationAssertion( "up regulation of cellular biosynthetic process") -AnnotationAssertion( "up-regulation of cellular biosynthetic process") -AnnotationAssertion( "upregulation of cellular biosynthetic process") -AnnotationAssertion( "activation of cellular biosynthetic process") -AnnotationAssertion( "stimulation of cellular biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031328") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "positive regulation of cellular biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (regulation of cellular catabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "regulation of cellular breakdown") -AnnotationAssertion( "regulation of cellular catabolism") -AnnotationAssertion( "regulation of cellular degradation") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031329") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "regulation of cellular catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) - -# Class: (negative regulation of cellular catabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "down regulation of cellular catabolic process") -AnnotationAssertion( "down-regulation of cellular catabolic process") -AnnotationAssertion( "downregulation of cellular catabolic process") -AnnotationAssertion( "negative regulation of cellular breakdown") -AnnotationAssertion( "negative regulation of cellular catabolism") -AnnotationAssertion( "negative regulation of cellular degradation") -AnnotationAssertion( "inhibition of cellular catabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031330") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "negative regulation of cellular catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (positive regulation of cellular catabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "positive regulation of cellular breakdown") -AnnotationAssertion( "positive regulation of cellular catabolism") -AnnotationAssertion( "positive regulation of cellular degradation") -AnnotationAssertion( "up regulation of cellular catabolic process") -AnnotationAssertion( "up-regulation of cellular catabolic process") -AnnotationAssertion( "upregulation of cellular catabolic process") -AnnotationAssertion( "activation of cellular catabolic process") -AnnotationAssertion( "stimulation of cellular catabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031331") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "positive regulation of cellular catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - # Class: (negative regulation of protein-containing complex assembly) AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of protein complex assembly.") @@ -77995,6 +77144,7 @@ AnnotationAssertion( "inhibition of protein modification") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0031400") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of protein modification process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -78008,6 +77158,7 @@ AnnotationAssertion( "stimulation of protein modification") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0031401") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of protein modification process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -78259,7 +77410,7 @@ AnnotationAssertion( "regulation of glucocorticoid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (negative regulation of glucocorticoid metabolic process) @@ -78274,7 +77425,7 @@ AnnotationAssertion( "GO:0031944") AnnotationAssertion(rdfs:label "negative regulation of glucocorticoid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -78292,7 +77443,7 @@ AnnotationAssertion( "GO:0031945") AnnotationAssertion(rdfs:label "positive regulation of glucocorticoid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -78341,15 +77492,17 @@ SubClassOf( (regulation of glucocorticoid catabolic process) AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0031949") AnnotationAssertion(rdfs:label "regulation of glucocorticoid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (negative regulation of glucocorticoid catabolic process) AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "down regulation of glucocorticoid catabolic process") AnnotationAssertion( "down-regulation of glucocorticoid catabolic process") AnnotationAssertion( "downregulation of glucocorticoid catabolic process") @@ -78358,7 +77511,7 @@ AnnotationAssertion( "GO:0031950") AnnotationAssertion(rdfs:label "negative regulation of glucocorticoid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (positive regulation of glucocorticoid catabolic process) @@ -78372,17 +77525,7 @@ AnnotationAssertion( "GO:0031951") AnnotationAssertion(rdfs:label "positive regulation of glucocorticoid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (nuclear receptor-mediated corticosteroid signaling pathway) - -AnnotationAssertion(Annotation( "PMID:11027914") Annotation( "PMID:12606724") "A nuclear receptor-mediated signaling pathway initiated by a corticosteroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.") -AnnotationAssertion( "corticosteroid receptor signalling pathway") -AnnotationAssertion( "intracellular corticosteroid receptor signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031958") -AnnotationAssertion(rdfs:label "nuclear receptor-mediated corticosteroid signaling pathway") -SubClassOf( ) +SubClassOf( ) # Class: (response to corticosteroid) @@ -79289,7 +78432,7 @@ AnnotationAssertion( "GO:0032345") AnnotationAssertion(rdfs:label "negative regulation of aldosterone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -79307,7 +78450,7 @@ AnnotationAssertion( "GO:0032346") AnnotationAssertion(rdfs:label "positive regulation of aldosterone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -79407,7 +78550,7 @@ AnnotationAssertion( "GO:0032353") AnnotationAssertion(rdfs:label "negative regulation of hormone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -81190,36 +80333,6 @@ AnnotationAssertion( "positive regulation of purine nucleotide catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of intracellular steroid hormone receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway.") -AnnotationAssertion(Annotation( "GOC:bf") "regulation of steroid hormone receptor signaling pathway") -AnnotationAssertion( "regulation of steroid hormone receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0033143") -AnnotationAssertion(rdfs:label "regulation of intracellular steroid hormone receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of intracellular steroid hormone receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway.") -AnnotationAssertion(Annotation( "GOC:bf") "negative regulation of steroid hormone receptor signaling pathway") -AnnotationAssertion(Annotation( "GOC:bf") "negative regulation of steroid hormone receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0033144") -AnnotationAssertion(rdfs:label "negative regulation of intracellular steroid hormone receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of intracellular steroid hormone receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway.") -AnnotationAssertion(Annotation( "GOC:bf") "positive regulation of steroid hormone receptor signaling pathway") -AnnotationAssertion( "positive regulation of steroid hormone receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0033145") -AnnotationAssertion(rdfs:label "positive regulation of intracellular steroid hormone receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (V(D)J recombination) AnnotationAssertion(Annotation( "GOC:add") Annotation( "ISBN:0781700221") Annotation( "ISBN:0781735149") "The process in which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS).") @@ -85789,8 +84902,9 @@ EquivalentClasses( ObjectIntersection # Class: (xenobiotic catabolic process) -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:krc") "The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.") +AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:krc") "The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organism exposed to it, carried out by individual cells. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19460"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "GO:0042737") AnnotationAssertion( "GO:0042738") AnnotationAssertion( "xenobiotic breakdown") @@ -85809,20 +84923,17 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "xenobiotic catabolic process") SubClassOf( ) -SubClassOf( ) -# Class: (cellular ketone metabolic process) +# Class: (ketone metabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0787650153") "The chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms, as carried out by individual cells. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "ketone metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042180") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular ketone metabolic process") +AnnotationAssertion(rdfs:label "ketone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) # Class: (ketone biosynthetic process) @@ -85836,7 +84947,6 @@ AnnotationAssertion( "ketone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (ketone catabolic process) @@ -85849,7 +84959,6 @@ AnnotationAssertion( "GO:0042182") AnnotationAssertion(rdfs:label "ketone catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) # Class: (formate catabolic process) @@ -85886,22 +84995,23 @@ AnnotationAssertion( "terpene metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (cellular modified amino acid catabolic process) +# Class: (modified amino acid catabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the breakdown of compounds derived from amino acids, organic acids containing one or more amino substituents.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "amino acid derivative catabolic process") AnnotationAssertion( "cellular amino acid derivative breakdown") AnnotationAssertion( "cellular amino acid derivative catabolic process") AnnotationAssertion( "cellular amino acid derivative catabolism") AnnotationAssertion( "cellular amino acid derivative degradation") AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid breakdown") +AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid catabolic process") AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid catabolism") AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid degradation") -AnnotationAssertion(Annotation( "GOC:mah") "modified amino acid catabolic process") AnnotationAssertion(Annotation( "GOC:mah") "modified amino acid catabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042219") -AnnotationAssertion(rdfs:label "cellular modified amino acid catabolic process") +AnnotationAssertion(rdfs:label "modified amino acid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (response to chemical) @@ -86266,9 +85376,10 @@ AnnotationAssertion( "regulation of membrane potential") SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cellular modified amino acid biosynthetic process) +# Class: (modified amino acid biosynthetic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "amino acid derivative biosynthetic process") AnnotationAssertion( "cellular amino acid derivative anabolism") AnnotationAssertion( "cellular amino acid derivative biosynthesis") @@ -86281,7 +85392,7 @@ AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid synthesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042398") -AnnotationAssertion(rdfs:label "cellular modified amino acid biosynthetic process") +AnnotationAssertion(rdfs:label "modified amino acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (biogenic amine biosynthetic process) @@ -86298,15 +85409,16 @@ AnnotationAssertion(rdfs:label "biog SubClassOf( ) SubClassOf( ) -# Class: (cellular biogenic amine catabolic process) +# Class: (biogenic amine catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "biogenic amine breakdown") AnnotationAssertion( "biogenic amine catabolism") AnnotationAssertion( "biogenic amine degradation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042402") -AnnotationAssertion(rdfs:label "cellular biogenic amine catabolic process") +AnnotationAssertion(rdfs:label "biogenic amine catabolic process") SubClassOf( ) # Class: (thyroid hormone metabolic process) @@ -87335,17 +86447,6 @@ AnnotationAssertion(rdfs:label "amid EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nuclear receptor-mediated glucocorticoid signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") "A nuclear receptor-mediated signaling pathway initiated by a glucocorticoid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.") -AnnotationAssertion( "glucocorticoid receptor signaling pathway") -AnnotationAssertion( "glucocorticoid receptor signalling pathway") -AnnotationAssertion( "intracellular glucocorticoid receptor signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0042921") -AnnotationAssertion(rdfs:label "nuclear receptor-mediated glucocorticoid signaling pathway") -SubClassOf( ) - # Class: (neuropeptide binding) AnnotationAssertion(Annotation( "PMID:10414961") Annotation( "PMID:38337033") "Interacting selectively and non-covalently and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators).") @@ -88046,19 +87147,22 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) DisjointClasses( ) -# Class: (non-membrane-bounded organelle) +# Class: (membraneless organelle) AnnotationAssertion(Annotation( "GOC:go_curators") "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/21881"^^xsd:anyURI) AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28153"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29106"^^xsd:anyURI) AnnotationAssertion( "NIF_Subcellular:sao1456184038") +AnnotationAssertion( "membrane-less organelle") +AnnotationAssertion( "non-membrane-bounded organelle") AnnotationAssertion( "non-membrane-enclosed organelle") AnnotationAssertion( "cellular_component") AnnotationAssertion( "biological condensate") AnnotationAssertion( "GO:0043228") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "non-membrane-bounded organelle") +AnnotationAssertion(rdfs:label "membraneless organelle") SubClassOf( ) # Class: (intracellular organelle) @@ -88095,14 +87199,16 @@ AnnotationAssertion(rdfs:label "intr EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (intracellular non-membrane-bounded organelle) +# Class: (intracellular membraneless organelle) AnnotationAssertion(Annotation( "GOC:go_curators") "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29106"^^xsd:anyURI) +AnnotationAssertion( "intracellular non-membrane-bounded organelle") AnnotationAssertion( "intracellular non-membrane-enclosed organelle") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0043232") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "intracellular non-membrane-bounded organelle") +AnnotationAssertion(rdfs:label "intracellular membraneless organelle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (organelle lumen) @@ -88195,13 +87301,15 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) -# Class: (extracellular non-membrane-bounded organelle) +# Class: (extracellular membraneless organelle) AnnotationAssertion(Annotation( "GOC:jl") "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring outside the cell.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29106"^^xsd:anyURI) +AnnotationAssertion( "extracellular non-membrane-bounded organelle") AnnotationAssertion( "extracellular non-membrane-enclosed organelle") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0043264") -AnnotationAssertion(rdfs:label "extracellular non-membrane-bounded organelle") +AnnotationAssertion(rdfs:label "extracellular membraneless organelle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (regulation of potassium ion transport) @@ -88612,27 +87720,6 @@ AnnotationAssertion( "proteoglycan binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (steroid hormone receptor signaling pathway) - -AnnotationAssertion(Annotation( "PMID:12606724") "The series of molecular signals mediated by a steroid hormone binding to a receptor.") -AnnotationAssertion( "steroid hormone mediated signalling") -AnnotationAssertion( "steroid hormone-mediated signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0043401") -AnnotationAssertion(rdfs:label "steroid hormone receptor signaling pathway") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (glucocorticoid mediated signaling pathway) - -AnnotationAssertion(Annotation( "PMID:15240347") "The series of molecular signals mediated by the detection of a glucocorticoid hormone.") -AnnotationAssertion( "glucocorticoid mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0043402") -AnnotationAssertion(rdfs:label "glucocorticoid mediated signaling pathway") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (skeletal muscle tissue regeneration) AnnotationAssertion(Annotation( "GOC:ef") Annotation( "GOC:mtg_muscle") Annotation( "PMID:12021255") Annotation( "PMID:16607119") "The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.") @@ -88690,27 +87777,6 @@ AnnotationAssertion(rdfs:label "nega EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (negative regulation of DNA-binding transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:jl") "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") -AnnotationAssertion( "2011-07-15T10:56:12Z") -AnnotationAssertion( "GO:1904168") -AnnotationAssertion( "GO:2000824") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "negative regulation of transcription factor activity") -AnnotationAssertion( "down regulation of transcription factor activity") -AnnotationAssertion( "down-regulation of transcription factor activity") -AnnotationAssertion( "downregulation of transcription factor activity") -AnnotationAssertion( "negative regulation of DNA binding transcription factor activity") -AnnotationAssertion( "negative regulation of sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "inhibition of transcription factor activity") -AnnotationAssertion( "negative regulation of androgen receptor activity") -AnnotationAssertion( "negative regulation of thyroid hormone receptor activity") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0043433") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of DNA-binding transcription factor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (response to peptide hormone) AnnotationAssertion(Annotation( "PMID:11027914") Annotation( "PMID:15134857") Annotation( "Wikipedia:Peptide_hormone") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.") @@ -88738,17 +87804,16 @@ AnnotationAssertion(rdfs:label "oxoa EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (cellular alkane metabolic process) +# Class: (alkane metabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "Wikipedia:Alkane") "The chemical reactions and pathways involving an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, as carried out by individual cells.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "alkane metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043446") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular alkane metabolic process") +AnnotationAssertion(rdfs:label "alkane metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) # Class: (alkane biosynthetic process) @@ -88761,7 +87826,6 @@ AnnotationAssertion( "GO:0043447") AnnotationAssertion(rdfs:label "alkane biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (alkane catabolic process) @@ -88773,7 +87837,6 @@ AnnotationAssertion( "GO:0043448") AnnotationAssertion(rdfs:label "alkane catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (regulation of secondary metabolic process) @@ -88799,7 +87862,7 @@ AnnotationAssertion( "GO:0043467") AnnotationAssertion(rdfs:label "regulation of generation of precursor metabolites and energy") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (regulation of carbohydrate catabolic process) @@ -88991,15 +88054,6 @@ SubClassOf( ObjectComplementOf(Object SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses( ObjectSomeValuesFrom( )) -# Class: (sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:jl") "Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.") -AnnotationAssertion( "sequence specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0043565") -AnnotationAssertion(rdfs:label "sequence-specific DNA binding") -SubClassOf( ) - # Class: (regulation of respiratory gaseous exchange) AnnotationAssertion(Annotation( "GOC:jl") "Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment.") @@ -89390,19 +88444,6 @@ AnnotationAssertion(rdfs:label "tran SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cellular metabolic process) - -AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways by which individual cells transform chemical substances.") -AnnotationAssertion( "cellular metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion(Annotation( "GOC:mah") "intermediary metabolism") -AnnotationAssertion( "GO:0044237") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.") -AnnotationAssertion(rdfs:label "cellular metabolic process") -SubClassOf( ) -SubClassOf( ) - # Class: (primary metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.") @@ -89419,19 +88460,6 @@ AnnotationAssertion( "primary metabolic process") SubClassOf( ) -# Class: (cellular lipid catabolic process) - -AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells.") -AnnotationAssertion( "cellular lipid breakdown") -AnnotationAssertion( "cellular lipid catabolism") -AnnotationAssertion( "cellular lipid degradation") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0044242") -AnnotationAssertion(rdfs:label "cellular lipid catabolic process") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - # Class: (cellular catabolic process) AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.") @@ -89441,35 +88469,8 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044248") AnnotationAssertion(rdfs:label "cellular catabolic process") +SubClassOf( ) SubClassOf( ) -SubClassOf( ) - -# Class: (cellular biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27052"^^xsd:anyURI) -AnnotationAssertion( "cellular anabolism") -AnnotationAssertion( "cellular biosynthesis") -AnnotationAssertion( "cellular formation") -AnnotationAssertion( "cellular synthesis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0044249") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.") -AnnotationAssertion(rdfs:label "cellular biosynthetic process") -SubClassOf( ) -SubClassOf( ) - -# Class: (cellular lipid metabolic process) - -AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways involving lipids, as carried out by individual cells.") -AnnotationAssertion( "cellular lipid metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0044255") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular lipid metabolic process") -SubClassOf( ) -SubClassOf( ) # Class: (intestinal lipid catabolic process) @@ -89495,7 +88496,6 @@ AnnotationAssertion( "GO:0044272") AnnotationAssertion(rdfs:label "sulfur compound biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (sulfur compound catabolic process) @@ -91430,7 +90430,7 @@ AnnotationAssertion( "GO:0045721") AnnotationAssertion(rdfs:label "negative regulation of gluconeogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (positive regulation of gluconeogenesis) @@ -91445,7 +90445,7 @@ AnnotationAssertion( "GO:0045722") AnnotationAssertion(rdfs:label "positive regulation of gluconeogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (positive regulation of fatty acid biosynthetic process) @@ -91496,8 +90496,8 @@ AnnotationAssertion( "positive regulation of glycogen biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (positive regulation of translation) @@ -91687,9 +90687,10 @@ AnnotationAssertion(rdfs:label "posi EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (negative regulation of cellular amino acid metabolic process) +# Class: (negative regulation of amino acid metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amino acid.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "down regulation of amino acid metabolic process") AnnotationAssertion( "down-regulation of amino acid metabolic process") AnnotationAssertion( "downregulation of amino acid metabolic process") @@ -91697,10 +90698,9 @@ AnnotationAssertion( "inhibition of amino acid metabolic process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0045763") -AnnotationAssertion(rdfs:label "negative regulation of cellular amino acid metabolic process") +AnnotationAssertion(rdfs:label "negative regulation of amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (positive regulation of amino acid metabolic process) @@ -91717,7 +90717,6 @@ AnnotationAssertion( "positive regulation of amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (regulation of angiogenesis) @@ -91914,6 +90913,7 @@ SubClassOf( (negative regulation of glycogen catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "down regulation of glycogen catabolic process") AnnotationAssertion( "down-regulation of glycogen catabolic process") AnnotationAssertion( "downregulation of glycogen catabolic process") @@ -91927,12 +90927,13 @@ AnnotationAssertion( "negative regulation of glycogen catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (positive regulation of glycogen catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "positive regulation of glycogen breakdown") AnnotationAssertion( "positive regulation of glycogen catabolism") AnnotationAssertion( "positive regulation of glycogen degradation") @@ -91947,7 +90948,7 @@ AnnotationAssertion( "positive regulation of glycogen catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (negative regulation of heart contraction) @@ -92233,56 +91234,6 @@ AnnotationAssertion(rdfs:label "posi EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (negative regulation of DNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.") -AnnotationAssertion( "GO:0016481") -AnnotationAssertion( "GO:0032582") -AnnotationAssertion( "GO:0061021") -AnnotationAssertion( "down regulation of transcription, DNA-dependent") -AnnotationAssertion( "down-regulation of transcription, DNA-dependent") -AnnotationAssertion( "downregulation of transcription, DNA-dependent") -AnnotationAssertion( "negative regulation of cellular transcription, DNA-dependent") -AnnotationAssertion(Annotation( "GOC:txnOH") "negative regulation of transcription, DNA-dependent") -AnnotationAssertion( "negative regulation of transcription, DNA-templated") -AnnotationAssertion( "inhibition of transcription, DNA-dependent") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "down regulation of gene-specific transcription") -AnnotationAssertion( "down-regulation of gene-specific transcription") -AnnotationAssertion( "downregulation of gene-specific transcription") -AnnotationAssertion( "inhibition of gene-specific transcription") -AnnotationAssertion( "negative regulation of gene-specific transcription") -AnnotationAssertion( "transcription repressor activity") -AnnotationAssertion( "GO:0045892") -AnnotationAssertion(rdfs:label "negative regulation of DNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of DNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.") -AnnotationAssertion( "GO:0043193") -AnnotationAssertion( "GO:0045941") -AnnotationAssertion( "GO:0061020") -AnnotationAssertion( "positive regulation of cellular transcription, DNA-dependent") -AnnotationAssertion(Annotation( "GOC:txnOH") "positive regulation of transcription, DNA-dependent") -AnnotationAssertion( "positive regulation of transcription, DNA-templated") -AnnotationAssertion( "up regulation of transcription, DNA-dependent") -AnnotationAssertion( "up-regulation of transcription, DNA-dependent") -AnnotationAssertion( "upregulation of transcription, DNA-dependent") -AnnotationAssertion( "activation of transcription, DNA-dependent") -AnnotationAssertion( "stimulation of gene-specific transcription") -AnnotationAssertion( "stimulation of transcription, DNA-dependent") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "activation of gene-specific transcription") -AnnotationAssertion( "positive regulation of gene-specific transcription") -AnnotationAssertion( "transcription activator activity") -AnnotationAssertion( "up regulation of gene-specific transcription") -AnnotationAssertion( "up-regulation of gene-specific transcription") -AnnotationAssertion( "upregulation of gene-specific transcription") -AnnotationAssertion( "GO:0045893") -AnnotationAssertion(rdfs:label "positive regulation of DNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (negative regulation of translational elongation) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of translational elongation.") @@ -92699,31 +91650,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) -# Class: (positive regulation of transcription by RNA polymerase II) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.") -AnnotationAssertion( "GO:0010552") -AnnotationAssertion( "GO:0045817") -AnnotationAssertion( "activation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "positive regulation of transcription from Pol II promoter") -AnnotationAssertion( "positive regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "stimulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "up regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "up-regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "upregulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "stimulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "activation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "positive regulation of gene-specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "positive regulation of global transcription from Pol II promoter") -AnnotationAssertion( "positive regulation of transcription from RNA polymerase II promoter, global") -AnnotationAssertion( "up regulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "up-regulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "upregulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "GO:0045944") -AnnotationAssertion(rdfs:label "positive regulation of transcription by RNA polymerase II") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (negative regulation of translational initiation) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of translational initiation.") @@ -93304,7 +92230,6 @@ AnnotationAssertion(rdfs:label "alde EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) # Class: (aldehyde catabolic process) @@ -93316,7 +92241,6 @@ AnnotationAssertion( "GO:0046185") AnnotationAssertion(rdfs:label "aldehyde catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (phenol-containing compound biosynthetic process) @@ -93550,6 +92474,7 @@ EquivalentClasses( ObjectIntersection # Class: (membrane lipid catabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion(Annotation( "GOC:tb") "membrane lipid peroxidation") AnnotationAssertion( "membrane lipid breakdown") AnnotationAssertion( "membrane lipid catabolism") @@ -93557,8 +92482,8 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0046466") AnnotationAssertion(rdfs:label "membrane lipid catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (membrane lipid biosynthetic process) @@ -93570,9 +92495,9 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0046467") AnnotationAssertion(rdfs:label "membrane lipid biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) # Class: (glycosylceramide biosynthetic process) @@ -94407,7 +93332,7 @@ AnnotationAssertion( "GO:0046885") AnnotationAssertion(rdfs:label "regulation of hormone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (positive regulation of hormone biosynthetic process) @@ -94426,7 +93351,7 @@ AnnotationAssertion( "GO:0046886") AnnotationAssertion(rdfs:label "positive regulation of hormone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -97759,6 +96684,7 @@ AnnotationAssertion( "stimulation of peptidyl-tyrosine phosphorylation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0050731") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of peptidyl-tyrosine phosphorylation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -97784,7 +96710,7 @@ AnnotationAssertion( "GO:0050746") AnnotationAssertion(rdfs:label "regulation of lipoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (positive regulation of lipoprotein metabolic process) @@ -97799,7 +96725,7 @@ AnnotationAssertion( "GO:0050747") AnnotationAssertion(rdfs:label "positive regulation of lipoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (negative regulation of lipoprotein metabolic process) @@ -97813,7 +96739,7 @@ AnnotationAssertion( "GO:0050748") AnnotationAssertion(rdfs:label "negative regulation of lipoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (regulation of phagocytosis) @@ -99502,44 +98428,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (regulation of DNA-binding transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:ai") "Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") -AnnotationAssertion( "GO:1904167") -AnnotationAssertion( "GO:2000823") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "regulation of transcription factor activity") -AnnotationAssertion( "regulation of DNA binding transcription factor activity") -AnnotationAssertion( "regulation of sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "regulation of androgen receptor activity") -AnnotationAssertion( "regulation of thyroid hormone receptor activity") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0051090") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of DNA-binding transcription factor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (positive regulation of DNA-binding transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:ai") "Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") -AnnotationAssertion( "rph") -AnnotationAssertion( "2015-04-22T12:22:16Z") -AnnotationAssertion( "GO:1904169") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "positive regulation of transcription factor activity") -AnnotationAssertion( "positive regulation of DNA binding transcription factor activity") -AnnotationAssertion( "positive regulation of sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "up regulation of transcription factor activity") -AnnotationAssertion( "up-regulation of transcription factor activity") -AnnotationAssertion( "upregulation of transcription factor activity") -AnnotationAssertion( "activation of transcription factor activity") -AnnotationAssertion( "positive regulation of thyroid hormone receptor activity") -AnnotationAssertion( "stimulation of transcription factor activity") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0051091") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of DNA-binding transcription factor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (negative regulation of developmental process) AnnotationAssertion(Annotation( "GOC:ai") "Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).") @@ -109851,13 +108739,13 @@ SubClassOf( ObjectSomeValuesFrom( (cytosolic lipolysis) AnnotationAssertion(Annotation( "GOC:autophagy") "The chemical reactions and pathways resulting in the breakdown of lipid droplets and hydrolysis of stored triglycerides occurring through the orchestrated activation of cytosolic lipases.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "dph") AnnotationAssertion( "2015-07-08T13:42:15Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0061725") AnnotationAssertion(rdfs:label "cytosolic lipolysis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (secretory granule maturation) @@ -111410,8 +110298,8 @@ AnnotationAssertion( "GO:0070857") AnnotationAssertion(rdfs:label "regulation of bile acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -111432,8 +110320,8 @@ AnnotationAssertion( "GO:0070858") AnnotationAssertion(rdfs:label "negative regulation of bile acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -111455,8 +110343,8 @@ AnnotationAssertion( "GO:0070859") AnnotationAssertion(rdfs:label "positive regulation of bile acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -115699,7 +114587,6 @@ AnnotationAssertion( "GO:0072592") AnnotationAssertion(rdfs:label "oxygen metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (establishment of protein localization to organelle) @@ -117510,6 +116397,7 @@ SubClassOf( "GOC:sjw") Annotation( "PMID:7583672") "Binding to an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure.") AnnotationAssertion( "pr") AnnotationAssertion( "2011-09-23T02:31:01Z") +AnnotationAssertion(Annotation(rdfs:label "BH2 binding can lead to eNOS uncoupling") "Reactome:R-HSA-1497796") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0097159") AnnotationAssertion(rdfs:label "organic cyclic compound binding") @@ -118315,19 +117203,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ligand-activated transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:dos") Annotation( "PMID:25568920") Annotation( "PMID:8735275") "A DNA-binding transcription factor activity regulated by binding to a ligand and that modulates the transcription of specific genes and gene sets. Examples include the lac and trp repressors in E.coli and steroid hormone receptors.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2013-10-17T15:51:30Z") -AnnotationAssertion( "direct ligand regulated sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "transcription factor activity, direct ligand regulated sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0098531") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "ligand-activated transcription factor activity") -SubClassOf( ) - # Class: (defense response to other organism) AnnotationAssertion(Annotation( "GOC:dos") "Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism.") @@ -120785,18 +119660,20 @@ AnnotationAssertion( "negative regulation of imaginal disc-derived leg joint morphogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (cellular anatomical entity) +# Class: (cellular anatomical structure) -AnnotationAssertion(Annotation( "GOC:kmv") "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.") +AnnotationAssertion(Annotation( "GOC:kmv") "A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24200"^^xsd:anyURI) AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28978"^^xsd:anyURI) AnnotationAssertion( "kmv") AnnotationAssertion( "2019-08-12T18:01:37Z") +AnnotationAssertion( "cellular anatomical entity") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0110165") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular anatomical entity") +AnnotationAssertion(rdfs:label "cellular anatomical structure") SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -121488,26 +120365,6 @@ AnnotationAssertion( "catalytic activity, acting on a glycoprotein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (transcription regulator activity) - -AnnotationAssertion(Annotation( "GOC:pg") Annotation( "GOC:txnOH-2018") Annotation( "Wikipedia:Transcription_factor") "A molecular function that controls the rate, timing and/or magnitude of gene transcription. The function of transcriptional regulators is to modulate gene expression at the transcription step so that they are expressed in the right cell at the right time and in the right amount throughout the life of the cell and the organism. Genes are transcriptional units, and include bacterial operons.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/13588"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/23609"^^xsd:anyURI) -AnnotationAssertion( "pg") -AnnotationAssertion( "2017-10-18T07:05:44Z") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0140110") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transcription regulator activity") -SubClassOf( ) - # Class: (extracellular vesicle biogenesis) AnnotationAssertion(Annotation( "PMID:28736435") "The assembly and secretion a set of components to form an extracellular vesicule, a membrane-bounded vesicle that is released into the extracellular region. Extracellular vesicles include exosomes, microvesicles and apoptotic bodies, based on the mechanism by which they are released from cells and differentiated based on their size and content.") @@ -121952,18 +120809,20 @@ AnnotationAssertion(rdfs:label "radi EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (non-membrane-bounded organelle assembly) +# Class: (membraneless organelle assembly) AnnotationAssertion(Annotation( "PMID:28225081") "The aggregation, arrangement and bonding together of a set of components to form a non-membrane-bounded organelle.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/21939"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29106"^^xsd:anyURI) AnnotationAssertion( "pg") AnnotationAssertion( "2021-08-09T15:30:06Z") +AnnotationAssertion( "non-membrane-bounded organelle assembly") AnnotationAssertion( "non-membrane-bounded organelle formation") AnnotationAssertion( "non-membrane-enclosed organelle assembly") AnnotationAssertion( "non-membrane-enclosed organelle formation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0140694") -AnnotationAssertion(rdfs:label "non-membrane-bounded organelle assembly") +AnnotationAssertion(rdfs:label "membraneless organelle assembly") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (ammonium excretion) @@ -122074,18 +120933,6 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "nucleic acid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (nuclear receptor-mediated signaling pathway) - -AnnotationAssertion(Annotation( "PMID:25614732") "The series of molecular signals initiated by a signaling molecule binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27599"^^xsd:anyURI) -AnnotationAssertion( "pg") -AnnotationAssertion( "2024-04-12T13:08:13Z") -AnnotationAssertion( "nuclear receptor signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0141193") -AnnotationAssertion(rdfs:label "nuclear receptor-mediated signaling pathway") -SubClassOf( ) - # Class: (regulation of protein localization to lysosome) AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:bc") Annotation( "PMID:24305806") "Any process that modulates the frequency, rate or extent of protein localization to lysosome.") @@ -123401,55 +122248,6 @@ AnnotationAssertion( "positive regulation of bone mineralization involved in bone maturation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of glucocorticoid mediated signaling pathway) - -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of glucocorticoid mediated signaling pathway.") -AnnotationAssertion( "hjd") -AnnotationAssertion( "2012-03-08T08:33:16Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of glucocorticoid mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1900169") -AnnotationAssertion(rdfs:label "regulation of glucocorticoid mediated signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of glucocorticoid mediated signaling pathway) - -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid mediated signaling pathway.") -AnnotationAssertion( "hjd") -AnnotationAssertion( "2012-03-08T08:33:20Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of glucocorticoid mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1900170") -AnnotationAssertion(rdfs:label "negative regulation of glucocorticoid mediated signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of glucocorticoid mediated signaling pathway) - -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of glucocorticoid mediated signaling pathway.") -AnnotationAssertion( "hjd") -AnnotationAssertion( "2012-03-08T08:33:23Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of glucocorticoid mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1900171") -AnnotationAssertion(rdfs:label "positive regulation of glucocorticoid mediated signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of protein localization to nucleus) AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of protein localization to nucleus.") @@ -124134,19 +122932,20 @@ AnnotationAssertion( "positive regulation of secondary metabolite biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of cellular alcohol catabolic process) +# Class: (regulation of alcohol catabolic process) -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of cellular alcohol catabolic process.") +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of alcohol catabolic process within a cell.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "krc") AnnotationAssertion( "2012-04-20T10:21:18Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900419") -AnnotationAssertion(rdfs:label "regulation of cellular alcohol catabolic process") +AnnotationAssertion(rdfs:label "regulation of alcohol catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (negative regulation of cellular alcohol catabolic process) +# Class: (negative regulation of alcohol catabolic process) -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that stops, prevents or reduces the frequency, rate or extent of cellular alcohol catabolic process.") +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that stops, prevents or reduces the frequency, rate or extent of alcohol catabolic process within a cell.") AnnotationAssertion( "krc") AnnotationAssertion( "2012-04-20T10:21:28Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of cellular alcohol catabolic process") @@ -124155,12 +122954,13 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of cellular alcohol catabolic process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900420") -AnnotationAssertion(rdfs:label "negative regulation of cellular alcohol catabolic process") +AnnotationAssertion(rdfs:label "negative regulation of alcohol catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (positive regulation of cellular alcohol catabolic process) +# Class: (positive regulation of alcohol catabolic process) -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of cellular alcohol catabolic process.") +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of alcohol catabolic process within a cell.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "krc") AnnotationAssertion( "2012-04-20T10:21:46Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of cellular alcohol catabolic process") @@ -124169,7 +122969,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of cellular alcohol catabolic process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900421") -AnnotationAssertion(rdfs:label "positive regulation of cellular alcohol catabolic process") +AnnotationAssertion(rdfs:label "positive regulation of alcohol catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (regulation of defense response to bacterium) @@ -130414,32 +129214,6 @@ AnnotationAssertion(rdfs:comment "hu AnnotationAssertion(rdfs:label "positive regulation of glycoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of RNA polymerase II regulatory region sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:dph") Annotation( "GOC:krc") Annotation( "GO_REF:0000059") Annotation( "PMID:20026326") "Any process that modulates the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") -AnnotationAssertion( "dph") -AnnotationAssertion( "2014-05-15T17:55:54Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1903025") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:dph") Annotation( "GOC:krc") Annotation( "GO_REF:0000059") Annotation( "PMID:20026326") "Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") -AnnotationAssertion( "dph") -AnnotationAssertion( "2014-05-15T17:56:00Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1903026") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of response to wounding) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:kmv") Annotation( "GO_REF:0000058") Annotation( "PMID:19164535") "Any process that modulates the frequency, rate or extent of response to wounding.") @@ -132203,7 +130977,6 @@ AnnotationAssertion(Annotation( "GO:1903561") AnnotationAssertion(rdfs:label "extracellular vesicle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (regulation of protein localization to cilium) @@ -134413,7 +133186,7 @@ AnnotationAssertion( "regulation of bile acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) # Class: (negative regulation of bile acid metabolic process) @@ -134433,7 +133206,7 @@ AnnotationAssertion( "GO:1904252") AnnotationAssertion(rdfs:label "negative regulation of bile acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -134455,7 +133228,7 @@ AnnotationAssertion( "GO:1904253") AnnotationAssertion(rdfs:label "positive regulation of bile acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -134474,33 +133247,6 @@ AnnotationAssertion(rdfs:label "regu EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (negative regulation of iron ion transmembrane transporter activity) - -AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:TermGenie") Annotation( "GOC:kom") Annotation( "GO_REF:0000059") Annotation( "PMID:15514116") "Any process that stops, prevents or reduces the frequency, rate or extent of an iron transmembrane transporter activity.") -AnnotationAssertion( "kom") -AnnotationAssertion( "2015-05-20T14:05:06Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of iron cation channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of iron-specific channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of iron cation channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of iron-specific channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of iron cation channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of iron-specific channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of iron cation channel activity") -AnnotationAssertion( "negative regulation of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of iron-specific channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of iron cation channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of iron-specific channel activity") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1904255") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of iron ion transmembrane transporter activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (regulation of Schwann cell chemotaxis) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:16203995") "Any process that modulates the frequency, rate or extent of Schwann cell chemotaxis.") @@ -139864,21 +138610,6 @@ AnnotationAssertion( "regulation of protein localization to chromatin") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:PARL") Annotation( "GOC:TermGenie") Annotation( "GOC:bc") Annotation( "GO_REF:0000059") Annotation( "PMID:23675531") "Any process that activates or increases the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") -AnnotationAssertion( "bc") -AnnotationAssertion( "2016-11-03T12:03:07Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1905636") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of artery morphogenesis) AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:BHF_miRNA") Annotation( "GOC:TermGenie") Annotation( "GOC:rph") Annotation( "GO_REF:0000058") Annotation( "PMID:27389411") "Any process that modulates the frequency, rate or extent of artery morphogenesis.") @@ -141443,29 +140174,6 @@ AnnotationAssertion(rdfs:label "prot EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (response to dsDNA) - -AnnotationAssertion(Annotation( "PMID:10051633") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.") -AnnotationAssertion( "sl") -AnnotationAssertion( "2015-06-24T17:54:13Z") -AnnotationAssertion( "response to double-stranded DNA") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1990784") -AnnotationAssertion(rdfs:label "response to dsDNA") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (cellular response to dsDNA) - -AnnotationAssertion(Annotation( "PMID:10051633") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.") -AnnotationAssertion( "sl") -AnnotationAssertion( "2015-06-24T22:48:25Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1990786") -AnnotationAssertion(rdfs:label "cellular response to dsDNA") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (dorsal root ganglion development) AnnotationAssertion(Annotation( "PMID:18583150") "The process whose specific outcome is the progression of a dorsal root ganglion over time, from its formation to the mature structure.") @@ -141478,18 +140186,6 @@ AnnotationAssertion(rdfs:label "dors EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (sequence-specific double-stranded DNA binding) - -AnnotationAssertion(Annotation( "GOC:dos") Annotation( "GOC:sl") "Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.") -AnnotationAssertion( "sl") -AnnotationAssertion( "2015-08-25T17:30:06Z") -AnnotationAssertion( "sequence-specific dsDNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:1990837") -AnnotationAssertion(rdfs:label "sequence-specific double-stranded DNA binding") -SubClassOf( ) -SubClassOf( ) - # Class: (adaptive thermogenesis) AnnotationAssertion(Annotation( "PMID:17260010") Annotation( "PMID:20363363") "The regulated production of heat in response to short term environmental changes, such as stress, diet or reduced temperature.") @@ -142354,7 +141050,6 @@ AnnotationAssertion( "negative regulation of glutamate metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (positive regulation of glutamate metabolic process) @@ -142369,7 +141064,6 @@ AnnotationAssertion( "positive regulation of glutamate metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (regulation of testosterone biosynthetic process) @@ -142630,19 +141324,20 @@ AnnotationAssertion( "negative regulation of DNA biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of cellular amino acid biosynthetic process) +# Class: (regulation of amino acid biosynthetic process) AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of cellular amino acid biosynthetic process.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "vw") AnnotationAssertion( "2010-12-10T11:54:19Z") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of amino acid biosynthetic process") AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid anabolism") AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid biosynthesis") +AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid biosynthetic process") AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid formation") AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid synthesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000282") -AnnotationAssertion(rdfs:label "regulation of cellular amino acid biosynthetic process") +AnnotationAssertion(rdfs:label "regulation of amino acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (negative regulation of amino acid biosynthetic process) @@ -142813,39 +141508,6 @@ AnnotationAssertion( "positive regulation of ceramide biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of glucocorticoid receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:BHF") "Any process that modulates the frequency, rate or extent of glucocorticoid receptor signaling pathway.") -AnnotationAssertion( "vk") -AnnotationAssertion( "2011-01-18T04:38:10Z") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of glucocorticoid receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000322") -AnnotationAssertion(rdfs:label "regulation of glucocorticoid receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of glucocorticoid receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:BHF") "Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid receptor signaling pathway.") -AnnotationAssertion( "vk") -AnnotationAssertion( "2011-01-18T04:38:43Z") -AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of glucocorticoid receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000323") -AnnotationAssertion(rdfs:label "negative regulation of glucocorticoid receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of glucocorticoid receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:BHF") "Any process that activates or increases the frequency, rate or extent of glucocorticoid receptor signaling pathway.") -AnnotationAssertion( "vk") -AnnotationAssertion( "2011-01-18T04:39:05Z") -AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of glucocorticoid receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000324") -AnnotationAssertion(rdfs:label "positive regulation of glucocorticoid receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of endothelial cell apoptotic process) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:mtg_apoptosis") "Any process that modulates the frequency, rate or extent of endothelial cell apoptotic process.") @@ -143594,7 +142256,7 @@ AnnotationAssertion( "GO:2000609") AnnotationAssertion(rdfs:label "regulation of thyroid hormone generation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (negative regulation of thyroid hormone generation) @@ -143606,7 +142268,7 @@ AnnotationAssertion( "GO:2000610") AnnotationAssertion(rdfs:label "negative regulation of thyroid hormone generation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -143619,7 +142281,7 @@ AnnotationAssertion( "GO:2000611") AnnotationAssertion(rdfs:label "positive regulation of thyroid hormone generation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -143843,39 +142505,6 @@ AnnotationAssertion( "positive regulation of type B pancreatic cell apoptotic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of transcription regulatory region DNA binding) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of transcription regulatory region DNA binding.") -AnnotationAssertion( "yaf") -AnnotationAssertion( "2011-05-09T03:28:11Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000677") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of transcription regulatory region DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of transcription regulatory region DNA binding) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that stops, prevents or reduces the frequency, rate or extent of transcription regulatory region DNA binding.") -AnnotationAssertion( "yaf") -AnnotationAssertion( "2011-05-09T03:28:14Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000678") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of transcription regulatory region DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of transcription regulatory region DNA binding) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that activates or increases the frequency, rate or extent of transcription regulatory region DNA binding.") -AnnotationAssertion( "yaf") -AnnotationAssertion( "2011-05-09T03:28:17Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000679") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of transcription regulatory region DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of cardiac muscle cell myoblast differentiation) AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of cardiac muscle cell myoblast differentiation.") @@ -144160,18 +142789,6 @@ AnnotationAssertion(rdfs:label "regu EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (positive regulation of androgen receptor activity) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that activates or increases the frequency, rate or extent of androgen receptor activity.") -AnnotationAssertion( "yaf") -AnnotationAssertion( "2011-07-15T10:56:14Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000825") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of androgen receptor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (regulation of heart morphogenesis) AnnotationAssertion(Annotation( "GOC:BHF") "Any process that modulates the frequency, rate or extent of heart morphogenesis.") @@ -145288,7 +143905,6 @@ SubClassOf( (information content entity) AnnotationAssertion(rdfs:label "information content entity"@en) -SubClassOf( ) # Class: (curation status specification) @@ -154558,6 +153174,16 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "receptor-type tyrosine-protein phosphatase C isoform CD45R") SubClassOf( ) +# Class: (obsolete protein-containing material entity) + +AnnotationAssertion(Annotation( "PRO:DAN") "OBSOLETE. A material entity that minimally consists of a protein.") +AnnotationAssertion( "PR:000064867") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000050567") +AnnotationAssertion(rdfs:comment "Note: Made obsolete since the term definition was much broader than intended. Originally meant to include only single proteins (and derivatives thereof; PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566), it instead also included cells defined as having certain protein attachments.") +AnnotationAssertion(rdfs:label "obsolete protein-containing material entity") +AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) + # Class: (protein-containing molecular entity) AnnotationAssertion(Annotation( "PRO:DAN") "A molecular entity that minimally consists of a protein.")