Doesn't decompile all java folders.

[knightrider-kit]

I have an apk that using Apktool or using Apk Editor it will show 3 different folders decompiled to smali/baksmali. But when running the apk through Show Java it only creates one of the folders with sub folders. The folders are com, org,and android. The only folder Show Java decompiles is the org folder. I attempted to cut that folder out and then decompile but it is unable to decompile then. I will upload the apk if your interested in attempting to resolve the issue, it is only 172 Kb.
Thank you.