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Application of phase regression to multi-echo BOLD #12

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tsalo opened this issue Oct 6, 2024 · 3 comments
Open

Application of phase regression to multi-echo BOLD #12

tsalo opened this issue Oct 6, 2024 · 3 comments

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@tsalo
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tsalo commented Oct 6, 2024

@CesarCaballeroGaudes @eurunuela @idevicente have any of you tried applying phase regression to multi-echo data? Asking you three because of your connections to https://github.com/idevicente/Phase-based_denoising_pipeline.

Stems from #9 and #2.

@eurunuela
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We used single-echo data for that work. I cannot remember if Iñigo tried it on multi-echo data though.

@CesarCaballeroGaudes
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We haven't tried yet, but we have collected new multi-echo data with both magnitude and phase in several projects.

@tsalo
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tsalo commented Oct 24, 2024

The easiest thing would be to just use the echo closest to 30 ms I guess, but I wonder if there would be any benefit to either averaging the complex-valued data across echoes before running the phase regression pipeline or running the pipeline on each echo separately and then averaging the denoised magnitude data afterward.

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