Implement pathway analysis using decoupler

[nictru]

https://decoupler-py.readthedocs.io/en/latest/index.html

[gabora]

Hello @nictru,
there is a decoupler nf-core module for bulk analysis (https://nf-co.re/modules/decoupler_decoupler by @Nic-Nic and @vicpaton ) which could probably be a good starting point for this new feature. It handles multiple samples given in a matrix, so if you provide the single cell data as a matrix then it can return the enrichment scores per cells. Reach out to us if we can help,
best
Attila

[nictru]

Thank you very much! Will get back to you :)

[grst]

I would even argue that bulk analysis is what you want most of the time, see also this decoupler tutorial:
https://decoupler-py.readthedocs.io/en/latest/notebooks/pseudobulk.html