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37 Open 25 Closed
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Issues list

Clean up Publishing
#176 opened Nov 26, 2024 by edmundmiller
3 tasks
2.3.0
groHMM fails with CHM13 occasionally bug Something isn't working
#172 opened Oct 21, 2024 by edmundmiller
@edmundmiller
Consider tsshmm enhancement New feature or request
#164 opened Sep 18, 2024 by edmundmiller
1
v.2.2.0 fails on multiple replicates of the same sample bug Something isn't working
#159 opened Aug 14, 2024 by dmitrymyl
6
Sample names must contain at least underscore (?) bug Something isn't working
#158 opened Aug 14, 2024 by dmitrymyl
1
Support not pooling reads for HOMER enhancement New feature or request
#153 opened Aug 3, 2024 by edmundmiller
Flakey test
#148 opened Jul 22, 2024 by edmundmiller
Issue with concatenation of technical replicates bug Something isn't working
#143 opened May 7, 2024 by bug1303
Consider Scatter Gather for processing speed enhancement New feature or request
#127 opened Jan 16, 2024 by edmundmiller
Saving BWA MEM log enhancement New feature or request
#124 opened Oct 19, 2023 by Caffeinated-Code 2.3.0
@edmundmiller
Discrepancy between bigwigs generated by bedtools and deeptools bug Something isn't working
#123 opened Oct 19, 2023 by Caffeinated-Code 2.3.0
@edmundmiller
Test results say chr22 when the ref is chr21? bug Something isn't working
#121 opened Sep 27, 2023 by edmundmiller
@edmundmiller
Flipped bigwig strands in PROseq samples bug Something isn't working
#115 opened Jun 29, 2023 by Caffeinated-Code
@edmundmiller
2
Add in nf-validation for samplesheet enhancement New feature or request
#114 opened Jun 26, 2023 by edmundmiller 2.3.0
1
@edmundmiller
2
Bedtools sort output isn't deterministic bug Something isn't working
#102 opened Jan 19, 2023 by edmundmiller
Improve reporting when no transcripts are found enhancement New feature or request
#95 opened Oct 31, 2022 by edmundmiller
@edmundmiller
Example of 3D genome integration enhancement New feature or request
#93 opened Oct 26, 2022 by edmundmiller
motif production for region enhancement New feature or request
#92 opened Oct 26, 2022 by edmundmiller
Example of integration with ATAC-seq pipeline output enhancement New feature or request
#91 opened Oct 26, 2022 by edmundmiller
Support STAR enhancement New feature or request
#90 opened Oct 26, 2022 by edmundmiller
Clean up published files enhancement New feature or request
#89 opened Oct 25, 2022 by edmundmiller
Add plotHeatmap by Gene and by Transcript enhancement New feature or request
#88 opened Oct 25, 2022 by edmundmiller
@edmundmiller
Refactor ext.when enhancement New feature or request
#85 opened Oct 21, 2022 by edmundmiller
Migrate CI tests to pytest-workflow enhancement New feature or request
#84 opened Oct 20, 2022 by edmundmiller
@edmundmiller
Set up AWS Full tests enhancement New feature or request
#78 opened Oct 17, 2022 by edmundmiller
@edmundmiller
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