GitHub - necsi/WHN-Wastewater-Data: Analyze international wastewater data and estimate real prevalence of COVID-19 in the population

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Analyze international wastewater data and estimate real prevalence of COVID-19 in the population

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Name		Name	Last commit message	Last commit date
Latest commit History 3,569 Commits
.github/workflows		.github/workflows
ConversionFactors		ConversionFactors
data		data
info		info
scripts		scripts
state_variant_infections		state_variant_infections
state_variant_infections_min		state_variant_infections_min
.gitignore		.gitignore
.yamllint		.yamllint
Biobot_ww.csv		Biobot_ww.csv
Biobot_ww.json		Biobot_ww.json
Biobot_wwf.json		Biobot_wwf.json
FecalSheddingModel.csv		FecalSheddingModel.csv
Fips_pop_short.csv		Fips_pop_short.csv
Germany_IHME_calc_conv_factor_optim_max.py		Germany_IHME_calc_conv_factor_optim_max.py
Germany_estimate_infections.py		Germany_estimate_infections.py
Germany_wwb.json		Germany_wwb.json
Joe_EstimatedInfections.csv		Joe_EstimatedInfections.csv
Joe_EstimatedInfections_min.csv		Joe_EstimatedInfections_min.csv
Joe_variant_infections.py		Joe_variant_infections.py
Joe_variant_infections_min.py		Joe_variant_infections_min.py
Links_to_data_and_visualizations.txt		Links_to_data_and_visualizations.txt
NC NOT UPDATED AUTOMATICALLY.txt		NC NOT UPDATED AUTOMATICALLY.txt
NWSS.html		NWSS.html
NWSS_all.html		NWSS_all.html
NWSS_min_max_test5.html		NWSS_min_max_test5.html
NWSS_minmax.html		NWSS_minmax.html
NWSS_ww.csv		NWSS_ww.csv
NWSS_ww.json		NWSS_ww.json
NWSS_wwa.html		NWSS_wwa.html
NWSS_wwf.csv		NWSS_wwf.csv
NWSS_wwf.json		NWSS_wwf.json
Nationwide_Joe.csv		Nationwide_Joe.csv
US_Biobot_county_data_2024-03-25.csv		US_Biobot_county_data_2024-03-25.csv
US_Biobot_county_data_2024-04-01.csv		US_Biobot_county_data_2024-04-01.csv
US_Biobot_county_data_2024-04-08.csv		US_Biobot_county_data_2024-04-08.csv
US_Biobot_county_data_2024-04-15.csv		US_Biobot_county_data_2024-04-15.csv
US_Biobot_county_data_2024-04-22.csv		US_Biobot_county_data_2024-04-22.csv
US_Biobot_county_data_2024-04-29.csv		US_Biobot_county_data_2024-04-29.csv
US_Biobot_nationwide_data_2024-03-25.csv		US_Biobot_nationwide_data_2024-03-25.csv
US_Biobot_nationwide_data_2024-04-01.csv		US_Biobot_nationwide_data_2024-04-01.csv
US_Biobot_nationwide_data_2024-04-08.csv		US_Biobot_nationwide_data_2024-04-08.csv
US_Biobot_nationwide_data_2024-04-15.csv		US_Biobot_nationwide_data_2024-04-15.csv
US_Biobot_nationwide_data_2024-04-22.csv		US_Biobot_nationwide_data_2024-04-22.csv
US_Biobot_nationwide_data_2024-04-29.csv		US_Biobot_nationwide_data_2024-04-29.csv
US_states_cleaned.csv		US_states_cleaned.csv
US_states_cleaned.json		US_states_cleaned.json
US_ww.json		US_ww.json
United_States_min_wwb.csv		United_States_min_wwb.csv
United_States_min_wwb.json		United_States_min_wwb.json
United_States_states_cleaned.csv		United_States_states_cleaned.csv
United_States_states_cleaned.json		United_States_states_cleaned.json
United_States_states_min.csv		United_States_states_min.csv
United_States_wwa.csv		United_States_wwa.csv
United_States_wwa.json		United_States_wwa.json
United_States_wwb.csv		United_States_wwb.csv
United_States_wwb.json		United_States_wwb.json
biweekly_variant_hhs1.csv		biweekly_variant_hhs1.csv
biweekly_variant_hhs10.csv		biweekly_variant_hhs10.csv
biweekly_variant_hhs2.csv		biweekly_variant_hhs2.csv
biweekly_variant_hhs3.csv		biweekly_variant_hhs3.csv
biweekly_variant_hhs4.csv		biweekly_variant_hhs4.csv
biweekly_variant_hhs5.csv		biweekly_variant_hhs5.csv
biweekly_variant_hhs6.csv		biweekly_variant_hhs6.csv
biweekly_variant_hhs7.csv		biweekly_variant_hhs7.csv
biweekly_variant_hhs8.csv		biweekly_variant_hhs8.csv
biweekly_variant_hhs9.csv		biweekly_variant_hhs9.csv
biweekly_variant_nationwide.csv		biweekly_variant_nationwide.csv
factors_min_max.ipynb		factors_min_max.ipynb
factors_min_max_states.ipynb		factors_min_max_states.ipynb
get_virus_concentration_wastewater_cdc.py		get_virus_concentration_wastewater_cdc.py
get_wastewater_change_cdc.py		get_wastewater_change_cdc.py
index.html		index.html
readme.txt		readme.txt
requirements.txt		requirements.txt
state_variant_infections.zip		state_variant_infections.zip
state_variant_infections_min.zip		state_variant_infections_min.zip
weighted_biweekly_variant_joe.csv		weighted_biweekly_variant_joe.csv
ww_factor_NWSS.py		ww_factor_NWSS.py
ww_factor_NWSS_min.py		ww_factor_NWSS_min.py
ww_factor_US.py		ww_factor_US.py
ww_factor_US_states.py		ww_factor_US_states.py
ww_variants_CDC.py		ww_variants_CDC.py

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International Wastewater Analysis and Estimation of Real Prevalence of COVID-19

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Analyze international wastewater data and estimate real prevalence of COVID-19 in the population

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