Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

rm: Unable to delete 'testGemoma.err': That file or directory does not exist #17

Open
chun-he-316 opened this issue Nov 30, 2024 · 0 comments

Comments

@chun-he-316
Copy link

Hello,
When I used 'bash runBITACORA.sh', I have encountered the following problems, how can I solve them?

----------------- Starting chymotry Genomic Gene Identification and Annotation
Doing chymotry tblastn
Parsing chymotry tblastn
Using GeMoMa to predict novel genes
Doing chymotry blastp and hmmer in newly identified genomic genes
----------------- chymotry DONE

rm: Unable to delete 'testGemoma.err': That file or directory does not exist
rm: Unable to delete 'testGemoma.out': That file or directory does not exist
ERROR in Scripts/Readgff.pm:Could not open file 'chymotry/chymotry_genomic_genes_unfiltered.gff3' No such file or directory at bitacora-master/Scripts/Readgff.pm line 13.
Command line argument error: Argument "subject". File is not accessible: `chymotry/chymotrygffgenomictrimmed.pep.fasta'
readline() on closed filehandle Blastfile at bitacora-master/Scripts/confirm_GFF_proteins_withlength.pl line 16.
Warning: [blastp] Examining 5 or more matches is recommended
Warning: [blastp] Examining 5 or more matches is recommended
readline() on closed filehandle GFFfile at bitacora-master/Scripts/get_nr_gff.pl line 131.
readline() on closed filehandle GFFfile atbitacora-master/Scripts/get_nr_gff.pl line 131.
BITACORA died with error

Please tell me the solution, thank you.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant