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Hello,
When I used 'bash runBITACORA.sh', I have encountered the following problems, how can I solve them?
----------------- Starting chymotry Genomic Gene Identification and Annotation
Doing chymotry tblastn
Parsing chymotry tblastn
Using GeMoMa to predict novel genes
Doing chymotry blastp and hmmer in newly identified genomic genes
----------------- chymotry DONE
rm: Unable to delete 'testGemoma.err': That file or directory does not exist
rm: Unable to delete 'testGemoma.out': That file or directory does not exist
ERROR in Scripts/Readgff.pm:Could not open file 'chymotry/chymotry_genomic_genes_unfiltered.gff3' No such file or directory at bitacora-master/Scripts/Readgff.pm line 13.
Command line argument error: Argument "subject". File is not accessible: `chymotry/chymotrygffgenomictrimmed.pep.fasta'
readline() on closed filehandle Blastfile at bitacora-master/Scripts/confirm_GFF_proteins_withlength.pl line 16.
Warning: [blastp] Examining 5 or more matches is recommended
Warning: [blastp] Examining 5 or more matches is recommended
readline() on closed filehandle GFFfile at bitacora-master/Scripts/get_nr_gff.pl line 131.
readline() on closed filehandle GFFfile atbitacora-master/Scripts/get_nr_gff.pl line 131.
BITACORA died with error
Please tell me the solution, thank you.
The text was updated successfully, but these errors were encountered:
Hello,
When I used 'bash runBITACORA.sh', I have encountered the following problems, how can I solve them?
----------------- Starting chymotry Genomic Gene Identification and Annotation
Doing chymotry tblastn
Parsing chymotry tblastn
Using GeMoMa to predict novel genes
Doing chymotry blastp and hmmer in newly identified genomic genes
----------------- chymotry DONE
rm: Unable to delete 'testGemoma.err': That file or directory does not exist
rm: Unable to delete 'testGemoma.out': That file or directory does not exist
ERROR in Scripts/Readgff.pm:Could not open file 'chymotry/chymotry_genomic_genes_unfiltered.gff3' No such file or directory at bitacora-master/Scripts/Readgff.pm line 13.
Command line argument error: Argument "subject". File is not accessible: `chymotry/chymotrygffgenomictrimmed.pep.fasta'
readline() on closed filehandle Blastfile at bitacora-master/Scripts/confirm_GFF_proteins_withlength.pl line 16.
Warning: [blastp] Examining 5 or more matches is recommended
Warning: [blastp] Examining 5 or more matches is recommended
readline() on closed filehandle GFFfile at bitacora-master/Scripts/get_nr_gff.pl line 131.
readline() on closed filehandle GFFfile atbitacora-master/Scripts/get_nr_gff.pl line 131.
BITACORA died with error
Please tell me the solution, thank you.
The text was updated successfully, but these errors were encountered: