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Introduction

This is a small git repository of the scripts we used in the genome assembly, annotation and comparative analysis of the Dysdera silvatica genome project, the inital draft assembly and the chromosome level assembly.

We also add information regarding additional supporting data provided within the original journal publication and some concerns about the data and how to manipulate it. We include several scripts in perl, python or R that might need additional requeriments that we have not included here.

Copyright (c) 2019-2021 Evolutionary Genomics & Bioinformatics Lab, Universitat de Barcelona.

Citation

This repository includes information regarding two different publications:

  • Initial draft assembly

    The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates. Jose Francisco Sánchez-Herrero, Cristina Frías-López, Paula Escuer, Silvia Hinojosa-Alvarez, Miquel A Arnedo, Alejandro Sánchez-Gracia, Julio Rozas. GigaScience, Volume 8, Issue 8, August 2019, giz099, https://doi.org/10.1093/gigascience/giz099

  • Chromosome level assembly

    Chromosome-scale assembly of the Canary Island endemic spider Dysdera silvatica (Arachnida, Araneae) sheds light on the origin and genome structure of chemoreceptor gene families in spiders. Paula Escuer, Vadim A. Pisarenco, Angel A. Fernández-Ruiz, Joel Vizueta, Jose F. Sánchez-Herrero, Miquel A. Arnedo, Alejandro Sánchez-Gracia, Julio Rozas. Submitted. 2021

    Check preprint in here: https://doi.org/10.22541/au.162067941.16111128/v1

Supporting information

There is additional information regarding this publication and draft reference genome that you would be able to find here:

  • NGS raw data file (NCBI BioProject entry): PRJNA475203

  • The whole-genome shotgun project has been deposited at DDBJ/ENA/GenBank under accession number QLNU00000000. ollow appropiate links for each version:

  • For each version of the genome assembly see additional details in each version within this git repository:

    • Initial Draft assembly v1

    • Chromosome Level assembly v2

License

MIT License

Copyright (c) 2019 - 2021 Evolutionary Genomics & Bioinformatics Lab Universitat de Barcelona

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.