Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Obtaining 10X PBMC RNA and ATAC data from 2 different donors with annotations #164

Open
jules-samaran opened this issue Mar 1, 2023 · 0 comments

Comments

@jules-samaran
Copy link

Dear authors,

I would like to download the 10X PBMC data (12k scRNA-seq cells and 10k scATAC-seq cells called Dataset 1 in your paper) from different donors you used in your papers and to also use the cell type annotations you used to benchmark methods on this data set in your paper.
When I started looking for it, the data I found on this repo ("data/pbmc.RNA.RDATA" and "data/pbmc.ATAC.RDATA") only contained 2k cells each and no annotations. I then went on your benchmark code repository and found that the link you gave there to download your benchmark data didn't work anymore (error message 403: You don't have permission to access /~chenfei/MAESTRO/MAESTRO_benchmark.tar.gz
on this server.).
I can't just download the data set from the 10X website because I would like to use the same cell type annotations that you used.
Could you please point me to where I can find this data?

Best regards,

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant