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Input seurat integration object #135

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mudappathir opened this issue Jun 1, 2021 · 1 comment
Open

Input seurat integration object #135

mudappathir opened this issue Jun 1, 2021 · 1 comment

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@mudappathir
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Hi,

I am running Seurat pipeline similar to this: https://satijalab.org/seurat/archive/v3.0/immune_alignment.html

Can I input the integrated seurat object as input to MAESTRO RNARunSeurat function?

@crazyhottommy
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@mudappathir the input for this function is a matrix https://github.com/liulab-dfci/MAESTRO/blob/master/R/RNARunSeurat.R#L51
we use Seurat under the hood.

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