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environment.yml
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environment.yml
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name: phosphosite
channels:
- defaults
- conda-forge
dependencies:
- appnope=0.1.2
- asttokens=2.0.5
- backcall=0.2.0
- ca-certificates=2023.01.10
- certifi=2022.12.7
- comm=0.1.2
- debugpy=1.5.1
- decorator=5.1.1
- entrypoints=0.4
- executing=0.8.3
- ipykernel=6.19.2
- ipython=8.8.0
- jedi=0.18.1
- jupyter_client=7.4.8
- jupyter_core=5.1.1
- libcxx=14.0.6
- libffi=3.4.2
- libsodium=1.0.18
- matplotlib-inline=0.1.6
- ncurses=6.4
- nest-asyncio=1.5.6
- openssl=1.1.1s
- packaging=22.0
- parso=0.8.3
- pexpect=4.8.0
- pickleshare=0.7.5
- pip=22.3.1
- platformdirs=2.5.2
- prompt-toolkit=3.0.36
- psutil=5.9.0
- ptyprocess=0.7.0
- pure_eval=0.2.2
- python=3.8.16
- python-dateutil=2.8.2
- pyzmq=23.2.0
- readline=8.2
- setuptools=65.6.3
- six=1.16.0
- sqlite=3.40.1
- stack_data=0.2.0
- tk=8.6.12
- tornado=6.2
- traitlets=5.7.1
- wcwidth=0.2.5
- wheel=0.37.1
- xz=5.2.10
- zeromq=4.3.4
- zlib=1.2.13
- pip:
- appdirs==1.4.4
- attrs==22.2.0
- beautifulsoup4==4.12.2
- bio==1.5.3
- biopandas==0.5.0.dev0
- biopython==1.80
- bioservices==1.11.2
- biothings-client==0.2.6
- cattrs==22.2.0
- charset-normalizer==3.0.1
- click==8.1.3
- colorama==0.4.6
- colorlog==6.7.0
- contourpy==1.0.7
- cycler==0.11.0
- deepdiff==6.3.0
- easydev==0.12.1
- exceptiongroup==1.1.1
- fastjsonschema==2.16.2
- fonttools==4.39.3
- gevent==22.10.2
- graphein==1.7.0
- greenlet==2.0.2
- grequests==0.6.0
- h5py==3.8.0
- idna==3.4
- importlib-metadata==6.0.0
- importlib-resources==5.10.2
- jaxtyping==0.2.15
- joblib==1.2.0
- jsonschema==4.17.3
- kiwisolver==1.4.4
- llvmlite==0.39.1
- loguru==0.7.0
- looseversion==1.1.2
- lxml==4.9.2
- markdown-it-py==2.2.0
- matplotlib==3.7.1
- mdurl==0.1.2
- mmtf-python==1.1.3
- msgpack==1.0.5
- multipledispatch==0.6.0
- mygene==3.2.2
- nbformat==5.7.3
- networkx==3.1
- numba==0.56.4
- numpy==1.23.5
- ordered-set==4.1.0
- pandas==1.5.3
- patsy==0.5.3
- pillow==9.5.0
- pkgutil-resolve-name==1.3.10
- plotly==5.13.0
- plotly-express==0.4.1
- pydantic==1.10.7
- pygments==2.15.1
- pyparsing==3.0.9
- pyrsistent==0.19.3
- pytz==2022.7.1
- pyyaml==5.4.1
- requests==2.28.2
- requests-cache==1.0.1
- rich==13.3.5
- rich-click==1.6.1
- scikit-learn==1.2.2
- scipy==1.10.0
- seaborn==0.12.2
- soupsieve==2.4.1
- statsmodels==0.13.5
- structuremap==0.0.8
- suds-community==1.1.2
- tenacity==8.1.0
- threadpoolctl==3.1.0
- tqdm==4.64.1
- typeguard==3.0.2
- typing-extensions==4.5.0
- url-normalize==1.4.3
- urllib3==1.26.14
- wget==3.2
- wrapt==1.15.0
- xarray==2023.1.0
- xmltodict==0.13.0
- zipp==3.12.1
- zope-event==4.6
- zope-interface==6.0
prefix: /Users/cameronmcmenamie/opt/anaconda3/envs/phosphosite