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bashrc
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bashrc
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# There are 3 different types of shells in bash: the login shell, normal shell
# and interactive shell. Login shells read ~/.profile and interactive shells
# read ~/.bashrc; in our setup, /etc/profile sources ~/.bashrc - thus all
# settings made here will also take effect in a login shell.
#
test -s ~/.alias && . ~/.alias || true
# determine hostname for later use in all dotfiles
if [[ "${HOSTNAME}" == tsa* ]]; then
BASHRC_HOST='tsa'
elif [[ "${HOSTNAME}" == daint* ]]; then
BASHRC_HOST='daint'
elif [[ "${HOSTNAME}" == dom* ]]; then
BASHRC_HOST='dom'
elif [[ "${HOSTNAME}" == todi* ]]; then
BASHRC_HOST='todi'
elif [[ "${HOSTNAME}" == balfrin* ]]; then
BASHRC_HOST='balfrin'
elif [[ "${HOSTNAME}" == eu* ]]; then
if tty -s; then
BASHRC_HOST='euler'
# Source global definitions as Jenkins user
else
if [ -f /etc/bashrc ]; then
. /etc/bashrc
module load stack openjdk
fi
return
fi
elif [[ "${HOSTNAME}" == *levante* ]]; then
if tty -s; then
BASHRC_HOST='levante'
# load java and git as Jenkins user
else
source /sw/etc/profile.levante
module load openjdk/17.0.0_35-gcc-11.2.0
module load git
return
fi
fi
export BASHRC_HOST
# ls colors
export LS_COLORS='di=1:fi=0:ln=100;93:pi=5:so=5:bd=5:cd=5:or=101:mi=0:ex=1;31'
# Git settings
export GIT_EDITOR="vim"
parse_git_branch() {
git branch 2> /dev/null | sed -e '/^[^*]/d' -e 's/* \(.*\)/ (\1)/'
}
# Command prompt
short_host="${HOSTNAME:0:2}-${HOSTNAME:${#HOSTNAME}-1:${#HOSTNAME}}"
export PS1="\u@$short_host:\W\[\033[33m\]\$(parse_git_branch)\[\033[00m\]> "
# Custom modules/paths/envs for each machine
# tsa
if [[ "${BASHRC_HOST}" == "tsa" ]]; then
source /oprusers/osm/.opr_setup_dir
export OPR_SETUP_DIR=/oprusers/osm/opr.arolla
export LM_SETUP_DIR=$HOME
PATH=${PATH}:${OPR_SETUP_DIR}/bin
export MODULEPATH=$MODULEPATH:$OPR_SETUP_DIR/modules/modulefiles
# >>> conda initialize >>>
# !! Contents within this block are managed by 'conda init' !!
__conda_setup="$('/users/juckerj/miniconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
if [ $? -eq 0 ]; then
eval "$__conda_setup"
else
if [ -f "/users/juckerj/miniconda3/etc/profile.d/conda.sh" ]; then
. "/users/juckerj/miniconda3/etc/profile.d/conda.sh"
else
export PATH="/users/juckerj/miniconda3/bin:$PATH"
fi
fi
unset __conda_setup
# <<< conda initialize <<<
# daint
elif [[ "${BASHRC_HOST}" == "daint" ]]; then
test -s /etc/bash_completion.d/git.sh && . /etc/bash_completion.d/git.sh || true
export PATH=/users/juckerj/fortls/bin:$PATH
elif [[ "${BASHRC_HOST}" == "levante" ]]; then
module load git
elif [[ "${BASHRC_HOST}" == "euler" ]]; then
export PATH=${PATH}:~/.local/bin
elif [[ "${BASHRC_HOST}" == "balfrin" ]]; then
export PATH=${PATH}:~/.local/bin
export MODULEPATH=/mch-environment/v6/modules:/usr/share/modules:/usr/share/Modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles
fi
# Machine specific aliases
# tsa
if [[ "${BASHRC_HOST}" == "tsa" ]]; then
alias sc='cd /scratch/juckerj/'
alias aall="scancel -u juckerj"
alias sq='squeue -u juckerj'
alias squ='squeue'
alias hh='cd /users/juckerj/'
# daint
elif [[ "${BASHRC_HOST}" == "daint" ]]; then
alias sc='cd /scratch/snx3000/juckerj/'
alias aall="scancel -u juckerj"
alias sq='squeue -u juckerj'
alias squ='squeue'
alias hh='cd /users/juckerj/'
alias jenkins='cd /scratch/snx3000/jenkins/workspace'
elif [[ "${BASHRC_HOST}" == "todi" ]]; then
alias sc='cd /capstor/scratch/cscs/juckerj'
alias aall="scancel -u juckerj"
alias sq='squeue -u juckerj'
alias squ='squeue'
alias hh='cd /users/juckerj/'
alias srcuenv='source ~/.local/bin/activate-uenv'
# balfrin
elif [[ "${BASHRC_HOST}" == "balfrin" ]]; then
alias sc='cd /scratch/mch/juckerj'
alias aall="scancel -u juckerj"
alias sq='squeue -u juckerj'
alias squ='squeue'
alias hh='cd /users/juckerj/'
alias jenkins='cd /scratch/e1000/meteoswiss/scratch/jenkins'
# dom
elif [[ "${BASHRC_HOST}" == "dom" ]]; then
alias sc='cd /scratch/snx3000tds/juckerj/'
alias aall="scancel -u juckerj"
alias sq='squeue -u juckerj'
alias squ='squeue'
alias hh='cd /users/juckerj/'
# euler
elif [[ "${BASHRC_HOST}" == "euler" ]]; then
alias sc='cd /cluster/scratch/juckerj/'
alias aall="scancel -u juckerj"
alias hh='cd /cluster/home/juckerj/'
alias sq='squeue -u juckerj'
alias squ='squeue'
# levante
elif [[ "${BASHRC_HOST}" == "levante" ]]; then
alias aall="scancel -u b381001"
alias sq='squeue -u b381001'
alias squ='squeue'
alias hh='cd /home/b/b381001'
alias sc='cd /scratch/b/b381001/'
fi
# Model specific aliases
# COSMO
alias ct="cat testsuite.out"
alias tt="tail -f testsuite.out"
alias bu='./test/jenkins/build.sh'
alias vo='vim INPUT_ORG'
alias vp='vim INPUT_PHY'
alias vd='vim INPUT_DYN'
alias vio='vim INPUT_IO'
# ICON
alias lsL='ls -ltr LOG*'
alias tL='tail -f LOG*'
# General aliases
alias m8='make -j 8'
alias m3='make -j 3'
# navigation
alias ls='ls --color'
alias lsl='ls -ltrh --color'
alias la='ls -A'
alias g='grep -i'
alias t='tail -f'
alias ..='cd ..'
alias ....='cd ../..'
alias fp='find "$PWD" -name'
alias lsC='ctags -R'
#environment
alias ml='module load'
alias mll='module load'
alias su='source'
alias srcrc='source ~/.bashrc'
alias rcvim='vim ~/.bashrc'
# git
alias gt='git status'
alias ga='git add'
alias gsi='git submodule init'
alias gsu='git submodule update'
alias gpo='git push origin'
#vim
alias vims='vim -S Session.vim'
#spack
alias spap="spack env activate"
alias clone_spack="git clone --recurse-submodules --shallow-submodules [email protected]:C2SM/spack-c2sm.git"
# helper functions
touch_all() {
# Touch all files in a folder
# Usage:
# touch_all -> touch all files in current folder
# touch_all <folder> -> touch all files in <folder>
if [ $# -eq 0 ]; then
folder=$(pwd)
else
folder=$1
fi
cd $folder
find -print | while read filename; do
# do whatever you want with the file
echo "touch $filename"
touch "$filename"
done
cd -
}
scp_to_daint() {
scp -r -o ProxyCommand="ssh -W %h:%p [email protected]" $1 [email protected]:$2
}
scp_from_daint() {
scp -r -o ProxyCommand="ssh -W %h:%p [email protected]" [email protected]:$1 $2
}
use_mods(){
module use /user-environment/modules
}