From 140d33bafa0b27fe8b9e570c3f707f0235dfe7f9 Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Wed, 12 Jun 2024 14:57:57 +0200 Subject: [PATCH] update asct+b tables version for HRA 7th release (#327) Co-authored-by: Anita Caron --- src/Makefile | 3 +- src/config_asct.json | 104 +++++++++++++++++++++---------------------- 2 files changed, 54 insertions(+), 53 deletions(-) diff --git a/src/Makefile b/src/Makefile index 1d74b1349..4ecdf235b 100644 --- a/src/Makefile +++ b/src/Makefile @@ -1,7 +1,8 @@ ROBOT = robot # Set this to your local path (Need to switch this to take input!) # JOBS = Quadriceps_Femoris Triceps_Surae White_Adipose don't have data in table -JOBS = Anatomical_Systems Blood Bone-Marrow Brain Eye Fallopian_tube Heart Kidney Knee Large_intestine Liver Lung Lymph_node Lymph_vasculature Main_Bronchus Mammary_Gland Muscular_System Ovary Pancreas Palatine_Tonsil Peripheral_nervous_system Placenta Prostate Skeleton Skin Small_intestine Spinal_Cord Spleen Thymus Trachea Ureter Urinary_bladder Uterus Blood_vasculature +# NEW TABLES NOT RELEASED YET: Mammary_Gland +JOBS = Anatomical_Systems Blood Bone-Marrow Brain Eye Fallopian_tube Heart Kidney Knee Large_intestine Liver Lung Lymph_node Lymph_vasculature Main_Bronchus Muscular_System Ovary Pancreas Palatine_Tonsil Peripheral_nervous_system Placenta Prostate Skeleton Skin Small_intestine Spinal_Cord Spleen Thymus Trachea Ureter Urinary_bladder Uterus Blood_vasculature JOBS_OLD = Bone-Marrow Blood Brain Eye Fallopian_tube Heart Kidney Knee Large_intestine Liver Lung Lymph_node Lymph_vasculature Ovary Pancreas Placenta Peripheral_nervous_system Prostate Skin Small_intestine Spleen Thymus Ureter Urinary_bladder Uterus Blood_vasculature OLD_VERSION = False diff --git a/src/config_asct.json b/src/config_asct.json index 64f5d6f06..e6f81bd73 100644 --- a/src/config_asct.json +++ b/src/config_asct.json @@ -1,12 +1,12 @@ [ { "name": "Anatomical_Systems", - "old": { + "new": { "sheetId": "1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU", "gid": "2028977062", - "version": "anatomical-systems-DRAFT-v1.0" + "version": "anatomical-systems-v1.0" }, - "new": { + "old": { "sheetId": "13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM", "gid": "2028977062", "version": "anatomical-systems-DRAFT-v1.1" @@ -17,7 +17,7 @@ "new": { "sheetId": "1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ", "gid": "939446662", - "version": "Blood_v1.4 DRAFT" + "version": "Blood_v1.4" }, "old": { "sheetId": "1wx2y8_t7NsAs8hPnr6u_N1QK8y_lC3t1G0DnD3LNUnQ", @@ -35,7 +35,7 @@ "new": { "sheetId": "14CS3wHJOObOXg2PCqcvdKIWFcYcfA8MT__YMxfhOIXQ", "gid": "1958526503", - "version": "Blood_Vasculature_v1.6-DRAFT" + "version": "Blood_Vasculature_v1.6" } }, { @@ -48,7 +48,7 @@ "new": { "sheetId": "11rOESHVOXClZQrVoAgmtrNB107aqKQpU4cWTLG93Pio", "gid": "771476671", - "version": "Bone Marrow_v1.5-DRAFT" + "version": "Bone Marrow_v1.5" } }, { @@ -61,17 +61,17 @@ "new": { "sheetId": "1_esnpxPeXtZ-XNt2H1-TfEzJidBEt_prlXMsG33z9I8", "gid": "2056967441", - "version": "Brain_v1.6-DRAFT" + "version": "Brain_v1.6" } }, { "name": "Eye", - "new": { + "old": { "sheetId": "1tNNPZXL0ycw5gNksDUKHZJpRkKgRdVAUh9AZ6ohpgOA", "gid": "695483621", "version": "eye-v1.4_DRAFT" }, - "old": { + "new": { "sheetId": "1tZ3YZ_PJ5viU2h8Bx3l02uhcMZ41AW4sbmJrKfRtfgg", "gid": "695483621", "version": "eye_v1.3" @@ -87,7 +87,7 @@ "new": { "sheetId": "1d9yOx0BKIRU3vnd_AZb0bK_pMztZOyMPD19XCM0gUB8", "gid": "991519552", - "version": "Fallopian_Tube_v1.3-DRAFT" + "version": "Fallopian_Tube_v1.3" } }, { @@ -100,7 +100,7 @@ "new": { "sheetId": "1IDAwYT1EW1Ao9fuNsZK8_74K24ZHlg7xFVpOjc6cI7E", "gid": "1759721736", - "version": "Heart_v1.4-DRAFT" + "version": "Heart_v1.4" } }, { @@ -113,7 +113,7 @@ "new": { "sheetId": "1SqNmcPDB8PrZF1BhzgdKBxkfLcCR8VYMAkSIbnK_AXA", "gid": "949267305", - "version": "Kidney_v1.5-DRAFT" + "version": "Kidney_v1.5" } }, { @@ -126,17 +126,17 @@ "new": { "sheetId": "1cQH2Pd2SGJcyUguaYgjqzXz7KwYnJmw1mZFd1WjbbgM", "gid": "1815525900", - "version": "Knee_v1.3-DRAFT" + "version": "Knee_v1.3" } }, { "name": "Large_intestine", - "new": { + "old": { "sheetId": "1zzyJg9zL_mbSfcqXWNbQgf9KMsxZViVgugm79H9fUp8", "gid": "2043181688", "version": "Large_Intestine_v1.4 DRAFT" }, - "old": { + "new": { "sheetId": "1DgN9i72VFDmGwynStGbhkpHfas_RA9ccIrDgI77ULJA", "gid": "2043181688", "version": "large_intestine_v1.3" @@ -152,7 +152,7 @@ "new": { "sheetId": "14UaKKGzb8QUUj6LgGlOyHwzz2G3RrLprPPKzm7fLt2E", "gid": "1694828397", - "version": "Liver_v1.3-DRAFT" + "version": "Liver_v1.3" } }, { @@ -165,7 +165,7 @@ "new": { "sheetId": "1Oytt1podyiyIhn8DYpF_j8fJbWgbrUlMq4mjuXLesVM", "gid": "1109843030", - "version": "Lung_v1.5-DRAFT" + "version": "Lung_v1.5" } }, { @@ -178,7 +178,7 @@ "new": { "sheetId": "1MqSVH7xLAxj_-g0MQWpG6r7jzgddVu6aO2tAH-hV0ho", "gid": "1223566381", - "version": "Lymph_Node_v1.4-DRAFT" + "version": "Lymph_Node_v1.4" } }, { @@ -191,7 +191,7 @@ "new": { "sheetId": "1XTP5THxsoLDgDtj-NKUc1OCCIzoMEwxXul8ZuCyyIjQ", "gid": "2087685463", - "version": "Lymph_Vasculature_v1.5-DRAFT" + "version": "Lymph_Vasculature_v1.5" } }, { @@ -204,12 +204,12 @@ "new": { "sheetId": "1zAvpQa2or2uVKf7_oK7_kSWMFIs83mdPIO5tb-FwYnA", "gid": "0", - "version": "main-bronchus-v1.2-DRAFT" + "version": "main-bronchus-v1.2" } }, { "name": "Mammary_Gland", - "new": { + "old": { "sheetId": "1Ac7C4dX7eYSMyR75AA2uVY9ZgNGOZZgbqgR8wmp-wdk", "gid": "928286522", "version": "mammary-gland-v1.0-DRAFT" @@ -225,7 +225,7 @@ "new": { "sheetId": "1_CDAZN89lWm85vzHQsVpyDJSCqhCw6CplwvvdMozVZs", "gid": "0", - "version": "muscular_system_v1.2-DRAFT" + "version": "muscular_system_v1.2" } }, { @@ -233,7 +233,7 @@ "new": { "sheetId": "1tk0zBaCqaUXn96uhcgAiUTbO03zYnI-0DQ9OmHdxFQQ", "gid": "756296951", - "version": "Ovary_v1.3 DRAFT" + "version": "Ovary_v1.3" }, "old": { "sheetId": "1bPMrORa7CQa2JpVkRF_jHmA_GdS1qBryXl9riMZUBJU", @@ -243,12 +243,12 @@ }, { "name": "Pancreas", - "old": { + "new": { "sheetId": "1dAnjj6RMzIcaV0t_njMhVHtDlLkEDCqtLteY9YdF7iM", "gid": "439021026", "version": "pancreas-v1.3" }, - "new": { + "old": { "sheetId": "1QqIyxxTGn1FfEFnUnHrffWuq1bKT9a-j7XrYPdRC8zg", "gid": "439021026", "version": "Pancreas_v1.4-DRAFT" @@ -264,7 +264,7 @@ "new": { "sheetId": "1r7zKA586gGTeMNapM4UHZNLDL-egFgc_wDzGKeV--LU", "gid": "0", - "version": "palatine-tonsil-v1.1-DRAFT" + "version": "palatine-tonsil-v1.1" } }, { @@ -277,7 +277,7 @@ "new": { "sheetId": "1ufuw7PGcOVU1sxfIB4E_jesk8Hk0zJVGPPlNeuU0gzY", "gid": "917578386", - "version": "Peripheral_Nervous_System_v1.2-DRAFT" + "version": "Peripheral_Nervous_System_v1.2" } }, { @@ -290,17 +290,17 @@ "new": { "sheetId": "142KGmKTzBSI_NwKJdylBuJa4HEncnxiicgpRlpfEEo8", "gid": "231591207", - "version": "Placenta_v1.2-DRAFT" + "version": "Placenta_v1.2" } }, { "name": "Prostate", - "old": { + "new": { "sheetId": "1hlSptGNXzyM7vxsH930YMf6gZkHVgHUE-Qc_4uFAmoU", "gid": "1239199370", "version": "Prostate-v1.1" }, - "new": { + "old": { "sheetId": "1jR_UpAkyn-cXNQXjpTBOWv1CTw1Z_5yi_UDoUMIHavw", "gid": "1239199370", "version": "Prostate_v1.2-DRAFT" @@ -308,7 +308,7 @@ }, { "name": "Quadriceps_Femoris", - "new": { + "old": { "sheetId": "1fr9d3C2pJNYFvopvPOOSwJjsAaIzRouzuu5daTCd50Y", "gid": "0", "version": "quadriceps-femoris-v1.0-DRAFT" @@ -324,17 +324,17 @@ "new": { "sheetId": "1VPa-nKs1anoeDZ6SRM86jGj_2wbxuxjztY9GeA2nzq0", "gid": "0", - "version": "skeleton-v1.2-DRAFT" + "version": "skeleton-v1.2" } }, { "name": "Skin", - "old": { + "new": { "sheetId": "1q2tYQ_uNh5O_eLOMUZm64ncCUeJc8mrern3zkRX3Ppw", "gid": "269383687", "version": "skin-v1.3" }, - "new": { + "old": { "sheetId": "1_xLnPyGyQy9fae7DrWkeyEN-iLTP8JQMxTL7HHkxG6o", "gid": "269383687", "version": "Skin_v1.4-DRAFT" @@ -342,12 +342,12 @@ }, { "name": "Small_intestine", - "new": { + "old": { "sheetId": "1KMOjJj-bVAqo39KuIOo0SaIVRtW9-5C5Y65NwnXlGqw", "gid": "247140941", "version": "Small_Intestine_v1.2-DRAFT" }, - "old": { + "new": { "sheetId": "1pZDLDiAHD-QDi-OTF4GtUHf6bkKkDc2qc0eIFnIqS_s", "gid": "247140941", "version": "Small_Intestine_v1.1" @@ -355,12 +355,12 @@ }, { "name": "Spinal_Cord", - "new": { + "old": { "sheetId": "10stOnKN9uucxrI665_tfu-PWC33E-0HCP1QMdFgYJ0s", "gid": "243784891", "version": "Spinal_Cord-v1.1_DRAFT" }, - "old": { + "new": { "sheetId": "1B8Yacpa0S_KuNqGGtKb83HTodKY_XGnIMy8tFCEIEdE", "gid": "243784891", "version": "Spinal_Cord_v1.0" @@ -368,12 +368,12 @@ }, { "name": "Spleen", - "new": { + "old": { "sheetId": "1KugrRJwk_IlvOpCpDffvk9YKFbSFd4PtJgAzxgrAmtM", "gid": "69626346", "version": "spleen_v1.4-DRAFT" }, - "old": { + "new": { "sheetId": "1AEKYXAKP1oRM2krnbU_Un89JfxYEm_gjjwwJTEt1SiI", "gid": "69626346", "version": "spleen_v1.3" @@ -381,12 +381,12 @@ }, { "name": "Thymus", - "old": { + "new": { "sheetId": "1tbHMjOi7wPXnq3TFp74N2kPKtiJ_pFSgz5u5CZOGGrc", "gid": "863370556", "version": "thymus-v1.4" }, - "new": { + "old": { "sheetId": "1EPl6_WSbS2Kl6T7pKWKGt9UCHvOBnZ5RXm45IpMVLVA", "gid": "863370556", "version": "Thymus_v1.5-DRAFT" @@ -394,12 +394,12 @@ }, { "name": "Trachea", - "new": { + "old": { "sheetId": "1GhOK8hoAE56CxSscEvqLD8-jAa_3SMbTVNF9gt9oI5M", "gid": "0", "version": "trachea-v1.1_DRAFT" }, - "old": { + "new": { "sheetId": "1fQK7XcXugC8eJZQyviNLevEUMoDT6cxxWp2AuH2gyws", "gid": "0", "version": "trachea-v1.0" @@ -407,7 +407,7 @@ }, { "name": "Triceps_Surae", - "new": { + "old": { "sheetId": "16eZc2yMhnThkQzFYHhiBatbrrh97ywVo2hEP7YbyNc0", "gid": "0", "version": "triceps-surae-v1.0-DRAFT" @@ -415,12 +415,12 @@ }, { "name": "Ureter", - "new": { + "old": { "sheetId": "1ZUmHX22NYMfBgFoni4zK6bsEYFn4rGSk9oYBNPcebZQ", "gid": "73126811", "version": "Ureter-v1.1-DRAFT" }, - "old": { + "new": { "sheetId": "1tK916JyG5ZSXW_cXfsyZnzXfjyoN-8B2GXLbYD6_vF0", "gid": "1106564583", "version": "Ureter-v1.0" @@ -428,12 +428,12 @@ }, { "name": "Urinary_bladder", - "new": { + "old": { "sheetId": "1iCZpti7fYupWhQjDz_tE01ii2WH23hIno9kYggMjDZo", "gid": "1057183099", "version": "Urinary_Bladder-v1.1-DRAFT" }, - "old": { + "new": { "sheetId": "1ohOG5jMf9d9eqjbVK6_u3CvgfG3wcLfs_pxB2838wOo", "gid": "1342577957", "version": "Urinary_Bladder-v1.0" @@ -441,12 +441,12 @@ }, { "name": "Uterus", - "new": { + "old": { "sheetId": "1Ei-scFQ5N-giPMm9_TKt3-hAFPveAyibCCulXDTBbig", "gid": "603441642", "version": "uterus_v1.2-DRAFT" }, - "old": { + "new": { "sheetId": "1RasOQCB4oP_1kvZL7Xv40TID6_365FQ-cgX2fGR54gw", "gid": "603441642", "version": "Uterus-v1.1" @@ -454,7 +454,7 @@ }, { "name": "White_adipose", - "new": { + "old": { "sheetId": "13ov5MlglQ2mqy8Xl3Hyp4aH2dx1P7Uc4efM4RZqi5DI", "gid": "0", "version": "White-Adipose-v1.0-DRAFT"