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plasmid_replicons.fa
156 lines (156 loc) · 9.56 KB
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plasmid_replicons.fa
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>IncA-C, IncA-C, , [Plasmid replicons]
GAGAACCAAAGACAAAGACCTGGAGAAACTCGACGTTATCAAAGACTCACCGCAAATGAGCCTGTTTGAG
ATCATTGAATCTCCGGCCAAGAAAGACGACTACTCCAACACAATCGAGATCTACGATGCGTTACCTAAGT
ACATTTGGGACCAAAAGCGTGAGCACGAAGACCTGTCCAACGCCGTAGTGACGCGACAATGCTCCATCAG
AGGCCAGCAGTTCACGGTGAAGGTGAAACCAGCCATCATCGAGAAGGACGACGGCAGAACCGTGCTGATC
TACGCGGGGCAGCGAGAGGAAATCCTTGAGGATGCTCTACGCAAGCTCGCAGTAAACGGGAAGGGCCATA
TCATAGAAGGCAAGGCTGGGGTCATGTTCACTCTGTACGAACTCCAGAAGGAGCTCTCGAAGATGGGGCA
CGGGTACAACCTGACAGAGATCAAGGAGGCAATTCAGGTTTGTCGT
>IncB-O, IncB-O, , [Plasmid replicons]
TCTGCGTTCCGCCAAGTTCGAGGAAAAATAGTGGGGGTTTTCCTTTATGGTCTTCTGAAACTTTTTTCAG
CCTTCCGGCACCGGCAAACTGCCGTCGTTTCTGCCATACGTCCTGAATGCCTTATGGCGCATTCTGCCGT
TTTCTGGCTTTCCGGACCGC
>IncK-B, IncK-B, , [Plasmid replicons]
AGGATCCGGGAAGTCAGAAAACGGCAGGATGCGCCATAAGGCATTCAGGACGTATGGCAGAAACGACGGC
AGTTTGCCGGTGCCGGAAGGCTGAAAAAAGTTTCAGAAGGCCATAAAGGAAAACCCCCACTATCTTTCCT
CGAACTTTGGCGGGCTCGTGAAAGA
>IncFrep, IncFrep, , [Plasmid replicons]
TGATCGTTTAAGGAATTTTGTGGCTGGCCACGCCGTAAGGTGGCAAGGAACTGGTTCTGATGTGGATTTA
CAGGAGCCAGAAAAGCAAAAACCCCGATAATCTTCTTCAACTTTGGCGAGTACGAAAAGATTACCGGGGC
CCACTTAAACCGTATAGCCAACAATTCAGCTATGCGGGGAGTATAGTTATATGCCCGGAAAAGTTCAAGA
CTTCTTTCTGTGCTCGCTCCTTCTGCGCATTGTAAGTGCAGGATGGTGTGACTGATCTTC
>IncFIA, IncFIA, , [Plasmid replicons]
CCATGCTGGTTCTAGAGAAGGTGTTGTGACAAATTGCCCTTTCAGTGTGACAAATTACCCTCAAATGACA
GTCCTGTCTGTGACAAATTGCCCTTAACCCTGTGACAGATTGCCCTCAGAAGAAGCTGTTTTTTCACAAA
GTTATCCCTGCTTATTGACTCTTTTTTATTTAGTGTGACAATCTAAAAACTTGTCACACTTCACATGGAT
CTGTCATGGCGGAAACAGCGGTTATCAATCACAAGAAACGTAAAAATAGCCCGCGAATCGTCCAGTCAAA
CGACCTCACTGAGGCGGCATATAGTCTCTCCCGGGATCAAAAACGTATGCTGTATCTGTTCGTTGACCAG
ATCAGAAAATCTGATGGCACCCTACAGGAACATGACGGTATCTGCGAGATCCATGTTGCTAAATATGCTG
AAATATTCGGATTGACCTCTGCGGAAGCCAGTAAGGATATAC
>IncFIB, IncFIB, , [Plasmid replicons]
CTCCCGTCGCTTCAGGGCATTAATCGCCTTAAGCTGGAGAAGGACTTTTCTGTCAAACTGGTACAGTTCA
AACAGGCGGGGATCGGCCTGTAACTGCACAATATCCCGCTCAGTATCGTAGTAAGCTGACTGTACCAGAT
GGGTGATATATTCCCGGGTGTGCTTCTCATCGGTACGGGAAAACGAAATCACGGTACCGGCAATGCGCTT
CAGGGAAGGGCTGATGCGCTCACGCAGCCTGCGGGATGACTGGCTTGAAGGTATACCACACAGTTTTGCA
AACTCAACAAAAGGCAGTTCAACTTTGTCACCAATCACGTTATGGCGGGCAAAGGAATGAATGATCCCCA
CCCAGGTCTTGAAATCATTATCCATATCCAGGCGGGGGCCGGTGATCTCAACCTTATCGAATCCCTCAGC
ACGGGCCAGGGAAAGACGTGTCAGCTCTTCCGTGGCATCAGTACGTGACAGTGTATTTTTTTTACTGTTC
TTCAGTGATTTAAGGGTCGGTACAAAAACGCCCAGACGCATCAGCGCCACAGGTTGTACGGTGTTGTTAT
TGTTTGGTGTCAGTGTCACCAGCTCACCGGAGGACTTATCCACCTCGCCGAACAGTTTTTTGATGTCTGA
ATTTTCGTTTTCCAGAAAGCCTCCAGCCTGTGGACAGTAAAAGAATAAACAGAAAATCGTGTGTCAGAAC
TCC
>IncFIC, IncFIC, , [Plasmid replicons]
GTGAACTGGCAGATGAGGAAGGTATTACCCAGGCGCAGATGCTTGAAAAACTGATTGAATCAGAGCTGAA
ACGTAGAGCGACTTTGTAAATATTCACATTCTTGCTTATCTCAGGCGTGAGTGATAGATTGCTGATCGTT
TAAGGAATTTTGTGGCTGGCCACGCCATAAGGTGGCAGGGAACTGGTTCTGATGTGGATTTACAGGAGCC
AGAAAAGCAAAAAACCCGATAATCTTCATCTAGTTTGGCGACGAGGAGAA
>IncFIIS, IncFIIS, , [Plasmid replicons]
CTGTCGTAAGCTGATGGCGAAAGCCGAAGGGTTCACGTCCCGTTTTGATTTTTCCGTCCATGTGGCGTTC
GTTCGTTCGCTGGGAAAGCGTCACCGGATGCCGCCTTTGCTGCGCCGTCGTGCCATCGATGCGCTGCTTC
AGGGGTTGTGCTTCCATTATGATCCACTGGCCAACCGTGTACAGAGATCCATCACCAATCTGGCTATAGA
GTGCGGTCTGGCCACTGAGTCAAAAAGTGGTAATCTGTCCATCACCCGCGCCACACGGGCGCTGAAGTTT
GTGGCAGAG
>IncHI1, IncHI1, , [Plasmid replicons]
GGAGCGATGGATTACTTCAGTACGCTTAGGCGCATTAATATAACGGGATTTGTCGTTCCCGATATGCTGC
TCATCACTCATACATTACCCCCTTGCTTCACTGAAAAACTCTTAATCTCATTAATAAATTGCTGGTAGAC
CGCCATCACGGATTCTTCGGCAACATCAAGCTGTTTGGGAGAGCAGAGCTCTTCTGATTTTTTGATATCC
AATACGGTTCTACCCCTAGAAGCTGCGGCTTTAAACGCTTCTGAGTTTTTGATATTTGCAGACATAAAGA
GTTCCTGCACTGTCCTTACCAGTTTATCCAGGACAATCTTTTCATAGGGACTCTTATCGTCGACATTCAC
TGCCAACACTTTGAACCAGCTTAGATTTTCGCCCTTGCTCGGCGATTGTTTGAATCGCTCACTGATCGTC
AACATGAAATCAGTTGTTGAGGCATAATCATACTCACGAGGTGAAACGGCA
>IncHI2, IncHI2, , [Plasmid replicons]
GGCTCACTACCGTTGTCATCCTGTAAGTTAAGAGGTTGATCTGCTCAACGGGACGACTATGACAACGGTA
GTGACTTGCTGGGCTCACTACCATTGTCACCCTGTGAATTGAGAGGTAGATCCGCTTAACCAGACGTCCA
TGACAACGGTAGTGACTTTCTGGGCTCAATACCGTTGTCACCCTGTGATTTAAGAGGTTGACCCGCTCTA
CTGGACGGCCATGACAACGGTAGTCACTTTCTGGGCTCACTACCGTTGTCGCCACATAGAATGAGAGGAG
CATCAGCTCAGCTGAACGGCAATGACTACAGTAATGAGCTGGATGAAGCATAACCATTGACATCTGGCCC
AACCGGAAGCCGTATTCGCCAATCCAATCGAGATTCACAATGGCCGTGACTCGCCGCATTAAGTTCCGGT
GTCCTCCCAAAGCTGAACGCACACTCGGAGGACAATGACAATGCCAGTAAGGTACACATCATTACCATTG
TCACTATAGCTACCAGAGAAGCCGGGATTTGAATGTCGATGGTAGTGAGTGGGTCAACTCACTGCCATTG
TCACCCCGTTACGATATTTTCCGTTGGATGTACTGGCCAATGAAGTAAAGCGTAGAAACCGGGTGTTAAC
AGGTGACTCAGGAGAAA
>IncI1, IncI1, , [Plasmid replicons]
CGAAAGCCGGACGGCAGAATGCGCCATAAGGCATTCAGGAGAGATGGCATGTACGGGCAGTAAGTCAGAA
GACTGAAGATGTTCCGGAAGCCATAAAAGGAAAACCCCCACTATCTTTCTTACGAACTTGGCGGAACGAC
GA
>IncL-M, IncL-M, , [Plasmid replicons]
GGATGAAAACTATCAGCATCTGAAGAGTAAACTGACAGACGCTGGATGGTTCATAAACAGCAATTATTGA
GTTTAACCCGCCGAATATGGCGGGTTTTTTGTGTATACTCAAGTGGTTATAGTCGTATGTTGTGGGAGGA
AGTAGTGAACAGAGTTACTGAGCGCCAGGAACAGAAGAGTAACCCGGAGTTCCAGAGAGAGTACCGGAAC
CGTATCCGGGAAACACACGACCAGTTAAACCTTTATCTCCCCAAAGATGCAAAAAGAATGTTGATAGAGA
TCACAAAAGTTAAAAAACTCACTCAGGCTGAAGTCATTGAATTTCTTGTCAAAAGTTATTACGACGGATT
GAAATTTGACGATTCTGAAGAGTGATCTTACTATGTAAAAGCGGGTTCGCAGGTATTGCCCCGCTTAGAA
ACGCATGATATGTTAAGCGGCGTTTACATAACCTTACGGGGTTATTACAGAATTTAGCACGGGAAGAGCG
GCCCGGAGATGTACCGCTTGGGGTGTGGCAGGAGCCACAAAAAGTAAAACCCCCTGATTCATCCTCTCAC
TTTGGCCGGTCAGAGATGAAATCAGGGGGCGCAAACTGCCTTGCTGGCAGAAAGGATTATAGCAAATGCG
TACCCTATTGCAATACAGCCCGGCCAATAAGTGCAGGGGCTGGTGAATCAAAAGAATCCATACCTACAGC
TTTCTGACATTGAGTCAGTAGAAGGTCTTTCGCCGGAGTTCATCTCCTGGCTTGAAAGCCAGTCCCCTAA
AGAATCGCCCCTGCAG
>IncN, IncN, , [Plasmid replicons]
GTTTCAACTCTGCCAAGTTCTTCTGTTGGGATTCCGGCAAAAGGAAACGGTCATTTAACCAAGCATGAGT
AGTAACCCATAAGCCTGAAGATTTGAATTGAGCAAGACTTTCATAAAGGCGGATCGTCCGTGGATTTCGA
AGACTGCCACAATCGCGGAGCGAGTAGGTGGTGAACTGGTTCGTCAGGCCGTAAATGTACCGCAGGAGTT
TATGGTTAAATTCGATTTCCCAGATACCACGAGCTGATCGGCTGCCAGCCTCTGTTAGCCAGGGGCGCGC
GACGCAGTCAAAACTCCCTTCTTTCGGGTAAAAGATTACCGCAGAACGGCTTAACTCAAACACGCCTTCT
TTAACATCCTTGATAGCCTGGTTACGGCTTACCTGAAAAATTTGCTCATAGTCAGCCACCTTTACTTTGA
AAGTAGAGTCACCGAGTACAGCCATCTCATCATCATCTTCGCTTACTGAAGCTGTGAAATACGTCTGCAT
AAGACATAACCAGAGAACGCGCTTTGCTTTTAGCGAGAGGTAGTAAGCAGCTTCGGTAAGCTCGTTAGAC
>IncN2, IncN2, , [Plasmid replicons]
ATGGCAGAGGAAAGCAAACAGCTAACCAAACGGCAACAAAAAGCCATTGATACAGCGGCGTTAATCCGGC
AGGAGCCGCCGCAGGGTGAAGATATGGCATTCACCCACTCCATTCTGTGCCAGGTCGGTTTGCCCCGTTC
TAAGGTGGCAGGGCGTGAGTTTATGCGCCGTTCTGGTGATGCCTGGCTCGTCGTACAGGCAGGCTGGATT
GATGAAGGCAGTGGCCCGGTAGAGCAGCCTTTACCCTATGGCGCTATGCCGCGACTCACGTTCGCCTGGA
TTTCATCGTATGCACTGCGCAACAAAACGCGGGAAATCGCCATCGGCCACAGCGCTAATGAGTTTCTTCA
CCTTATGGGGATGGACTCACAGGGAACCCGTCATAAAACGCTGCGTACACAAATGCAGGCGCTGGCCGCG
TGTCGTTTGCAGCTGGGCTTTAAGGGCCGGACCTATAACGGCCAGCCTGTCGAACAGTTTGACGCCTGGA
TCAAAGATGGTGACGCGAAGCAGCTCACGCTATGGCCGGGAACACTCACCCTGTCCGAAGGCTATTATAA
CGGCCTGATAGACAGCGCCGTTCCGCTCGACAACAGAGCGTTACATGTGCTGAAAGGTTCTGCGCTGGCG
CTCGATATATACGCGTGGCTTGCTCACCGTCTCCACCGCATCGAGGGCCGCCCGGTCATGCTGTACTGGA
TGAAGCTGCGGGAGCAGTTCGCCCAGGAGTACAGCGGGAAGAATGCCGACAAGGATTTTAAACGAGCATT
CATGCCAGCGCTGAAACAGGTGCTTTCAGTGTATCCGGCGGCAAAGGTCGAACAGGTTAAGGGTGGCCTG
CTGCTGTATTGTTCCCCTCCCCCAATTCCATATAAACAGTCTTGA
>IncP, IncP, , [Plasmid replicons]
TCACGCGCCAGGGCGCAGCCCTGGTTAAAAACAAGGTTTATAAATATTGGTTTAAAAGCAGGTTAAAAGA
CAGGTTAGCGGTGGCCGAAAAACGGGCGGAAACCCTTGCAAATGCTGGATTTTCTGCCTGTGGACAGCCC
CTCAAATGTCAATAGGTGCGCCCCTCATCTGTCAGCACTCTGCCCCTCAAGTGTCAAGGATCGCGCCCCT
CATCTGTCAGTAGTCGCGCCCCTCAAGTGTCAATACCGCAGGGCACTTATCCCCAGGCTTGTCCACATCA
TCTGTGGGAAACTCGCGTAAAATCAGGCGTTTTCGCCGATTTGCGAGGCTGGCCAGCTCCACGTCGCCGG
CCGAAATCGAGCCTGCCCCTCATCTGTCAACGCCGCGCCGGGTGAGTCGGCCCCTCAAGTGTCAACGTCC
GCCCCTCATCTGTCAGTGAGGGCCAAGTTTTCCGCGAGGTATCCACAACGCCGGCGGCCGGCCGCGGTGT
CTCGCACACGGCTTCGACGGCGTTTCTGGCGCGTTTGCAGGGCCATAG
>IncT, IncT, , [Plasmid replicons]
TTGGCCTGTTTGTGCCTAAACCATCAAGGTCATCTGACTACAGCCCGATGATTGATGTCAGTGAATTAAG
TTCTACCTTTGAATTTGCAAGACTTGAGGGGTTTACTGACATAAAAATCACTGGTGAACGTCTTGATATG
GATACTGATTTCAAGGTGTGGATCGGCATAGTCAAAGCGTTCAGCAAGTACGGGATTTCGTCAAACCGCA
TCAAACTAAAGTTTTCTGAGTTCGCAAAAGATTGTGGTTTCCCCGGTAAAAAACTGGACAAGAAACTGAG
AGCGCATATAGATGAATCGCTTCGTAAAATCAGGGGGAAATCGATCTCATTTAAGCGAGGCAAAGATTCA
CAATCTGCATATCATACCGGCCTCATAAAGATAGCCTATTTCAATGCCGATACAGACGTTGTGGAACTGG
AAGCAGACGAGCGATTATGGGAGTTATACTACTTTGATTATCGTGTTGTTCTTCAACTACATGCAATAAA
AGCCCTTCCACGTCTAGAAGTTGCACAAGCCCTGTATACCTTCCTTGCAAGCCTTCCAAGTAACCCGGCT
CCTATCTCTTTTGAACGCCTACGTGAAAGGTTGTCTCTGATCAGTCAGGTTAAAGAACAGAATCGAATCA
TCAAAAAAGCGATTACTAAGCTGATAGATATCGGCTATTTGGACGCTTCTATGGTGAAAAAAGGACAAGA
GAATTACCTCATCATTCACAAGCGAAGTCCAAAGCTAAGTGTAATCAACG
>IncW, IncW, , [Plasmid replicons]
CCTAAGAACAACAAAGCCCCCGGCCATCGTATCAACGAGATCATCAAGACGAGCCTCGCGCTCGAAATGG
AGGATGCCCGCGAAGCTGGCTTAGTCGGCTACATGGCCCGTTGCCTTGTGCAAGCGACCATGCCCCACAC
CGACCCCAAGACCAGCTACTTTGAGCGCACCAACGGCATCGTCACCTTGTCGATCATGGGCAAGCCGAGC
ATCGGCCTGCCCTACGGTTCTATGCCGCGCACC
>IncX, IncX, , [Plasmid replicons]
AACCTTAGAGGCTATTTAAGTTGCTGATTTATATTAATTTTATTGTTCAAACATGAGAGCTTAGTACGTG
AAACATGAGAGCTTAGTACGTTAGCCATGAGAGCTTAGTACGTTAGCCATGAGGGTTTAGTTCGTTAAAC
ATGAGAGCTTAGTACGTTAAACATGAGAGCTTAGTACGTGAAACATGAGAGCTTAGTACGTACTATCAAC
AGGTTGAACTGCTGATCTTCAGATCTAGCTTAAAACAGGTGGCTTTTTAATCATCTTTGCCAAGCATGGC
GCGGGTTTGGGGTAATATAGCGACTCATAAAAGCGTTAAACATGAGTGGATAGTACGTTGCTAAAACATG
AGATAAAAATTGACTCTCA
>IncY, IncY, , [Plasmid replicons]
GCGAGAATGGACGATTACAAAACTTTCCCGGCCTTTCTTCTCAATTGAACAGTCGAGATAGCCGATTGTT
TTAAGCTGTTCTATCGCTTTCTTAATGATACGGTTTTGCTCGCCAACAGCCGACTGCAAAGCCAGGCGCT
CACGGATTCGCGCGAACGATAGCGGCAACGGGTTCTGCGGAAGGCTTTCGATAAAAGTGTAAATGGCTTG
TGCTGCTTCTTTCTTCGGAAGGGCACGCAAGGCGTGGTGCTGCAACAGGACGCGATAATCAAGCTGGAAC
AGCTCCCACAGCTTCGAGTCGGCTTCCAGCTCGATCAGATCGAGGTCAGCATCGAAACGTCCGACCTTCA
ACAGACCAGTCTGGTAGCCACCTTTAGCATCTTTACCACGCTTAAAAGCGATACCCTTGTTACGCAAGCG
CCCAAGTGATTCATGAATGGTTAAACGCAGTTTCGCATCCAGACGTTTTGAGGGGAAACCACAGGCTTTA
GCGAATTCCTGAAACGATAACTGGATGGTGTTTGAGGACAAGCCGTATTTGCTGAACGCGTAGATAACAC
CGATCCACGTTTTGAAATCAGTATCCATATCGAGTCGAGGACCGGTGATTTTAATGTCATCGTAACCTTC
TGCTTTAGCTATCTCCAGCTGGGAAAACGCTTTGGTGGCATCAATCTCTTTACTTTCTCCTTTGCTCTTT
GATGGCTTCGGCACGAATACCCCCAAGCGCATCAACGCTACAGGCTGCACAGTGTTGTTTGAATT