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BRIG keeps on showing not enough space although I changed the drive I was previously working on. The image rendered is incomplete, cant see the colored rings outside #18

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zararafaque opened this issue Feb 3, 2021 · 2 comments

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@zararafaque
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Running BLAST...
Sequence length: 5246185
makeblastdb -dbtype nucl -in D:\scratch\Spaced0NA_114.fna
Error: mdb_env_open: There is not enough space on the disk.

11890_UEC11.fastaVsS... exists, skipping ..
makeblastdb -dbtype nucl -in D:\scratch\Spaced0NA_114.fna
Error: mdb_env_open: There is not enough space on the disk.

blastn -outfmt 6 -query E:\NGS\contigs\20171031_Andrews1\contigs\11891_UEC31.fasta -db D:\scratch\Spaced0NA_114.fna -out D:\scratch\11891_UEC31.fastaVsSpaced0NA_114.fna.tab -task blastn
BLAST Database error: No alias or index file found for nucleotide database [D:\scratch\Spaced0NA_114.fna] in search path [C:\Users\Zara Rafaque\Downloads\BRIG-0.95-dist\BRIG-0.95-dist;;]

Parsing BLAST Results...

Rendering CGVIEW image...
java -Xmx1500m -jar cgview\cgview.jar -f jpg -i D:\scratch\NA_114.fna.xml -o D:\NA_114.fna.jpg
Parsing XML input.
Drawing features....
Positioning and drawing 0 labels..........................
0 labels were removed.
Drawing tick marks.
Drawing legends.
The map has been drawn.
Writing picture to D:\NA_114.fna.jpg
Done.

@leosanbu
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Same problem here, I imagine it is because i'm trying to run it with 30 genomes. I tried to run it with "java -Xmx2000m jar BRIG.jar" in case it is a memory issue but seems to use "java -Xmx1500m" anyway at the CGVIEW rendering stage.
Did you get to know the problem? Thanks!

@hunongdaxiaocao
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same problem with you ! could you have any way to resolve that ? thank you !

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