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BRIG keeps on showing not enough space although I changed the drive I was previously working on. The image rendered is incomplete, cant see the colored rings outside
#18
Open
zararafaque opened this issue
Feb 3, 2021
· 2 comments
Running BLAST...
Sequence length: 5246185
makeblastdb -dbtype nucl -in D:\scratch\Spaced0NA_114.fna
Error: mdb_env_open: There is not enough space on the disk.
11890_UEC11.fastaVsS... exists, skipping ..
makeblastdb -dbtype nucl -in D:\scratch\Spaced0NA_114.fna
Error: mdb_env_open: There is not enough space on the disk.
blastn -outfmt 6 -query E:\NGS\contigs\20171031_Andrews1\contigs\11891_UEC31.fasta -db D:\scratch\Spaced0NA_114.fna -out D:\scratch\11891_UEC31.fastaVsSpaced0NA_114.fna.tab -task blastn
BLAST Database error: No alias or index file found for nucleotide database [D:\scratch\Spaced0NA_114.fna] in search path [C:\Users\Zara Rafaque\Downloads\BRIG-0.95-dist\BRIG-0.95-dist;;]
Parsing BLAST Results...
Rendering CGVIEW image...
java -Xmx1500m -jar cgview\cgview.jar -f jpg -i D:\scratch\NA_114.fna.xml -o D:\NA_114.fna.jpg
Parsing XML input.
Drawing features....
Positioning and drawing 0 labels..........................
0 labels were removed.
Drawing tick marks.
Drawing legends.
The map has been drawn.
Writing picture to D:\NA_114.fna.jpg
Done.
The text was updated successfully, but these errors were encountered:
Same problem here, I imagine it is because i'm trying to run it with 30 genomes. I tried to run it with "java -Xmx2000m jar BRIG.jar" in case it is a memory issue but seems to use "java -Xmx1500m" anyway at the CGVIEW rendering stage.
Did you get to know the problem? Thanks!
Running BLAST...
Sequence length: 5246185
makeblastdb -dbtype nucl -in D:\scratch\Spaced0NA_114.fna
Error: mdb_env_open: There is not enough space on the disk.
11890_UEC11.fastaVsS... exists, skipping ..
makeblastdb -dbtype nucl -in D:\scratch\Spaced0NA_114.fna
Error: mdb_env_open: There is not enough space on the disk.
blastn -outfmt 6 -query E:\NGS\contigs\20171031_Andrews1\contigs\11891_UEC31.fasta -db D:\scratch\Spaced0NA_114.fna -out D:\scratch\11891_UEC31.fastaVsSpaced0NA_114.fna.tab -task blastn
BLAST Database error: No alias or index file found for nucleotide database [D:\scratch\Spaced0NA_114.fna] in search path [C:\Users\Zara Rafaque\Downloads\BRIG-0.95-dist\BRIG-0.95-dist;;]
Parsing BLAST Results...
Rendering CGVIEW image...
java -Xmx1500m -jar cgview\cgview.jar -f jpg -i D:\scratch\NA_114.fna.xml -o D:\NA_114.fna.jpg
Parsing XML input.
Drawing features....
Positioning and drawing 0 labels..........................
0 labels were removed.
Drawing tick marks.
Drawing legends.
The map has been drawn.
Writing picture to D:\NA_114.fna.jpg
Done.
The text was updated successfully, but these errors were encountered: