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SYS_ERROR:org.xml.sax.SAXException: value for 'proportionOfThickness' attribute in featureRange element must be between 0 and 1 in null at line 1192 column 147 #16

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ruchi19flowchart opened this issue Jun 29, 2020 · 1 comment

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@ruchi19flowchart
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Your query File:
/Data/NGS_1165_Circos_genomes/genome/Bacillus_paralicheniformis.fna

Multi-FASTA detected, Rewriting headers

Initializing XML output..

Running BLAST...
Sequence length: 3976743
Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping ..
Bacillus_paralicheni... exists, skipping ..
Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping ..
Bacillus_paralicheni... exists, skipping ..
Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping ..
G1_gene.fnaVsSpaced1... exists, skipping ..
Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping ..
Bacillus_licheniform... exists, skipping ..
Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping ..
Bacillus_amyloliquef... exists, skipping ..

Parsing BLAST Results...

Rendering CGVIEW image...
java -Xmx1500m -jar cgview/cgview.jar -f jpg -i /Data/NGS_1165_Circos_genomes/genome/scratch/Bacillus_paralicheniformis.fna.xml -o /Data/NGS_1165_Circos_genomes/genome/Bacillus_paralicheniformis.fna.jpg
Parsing XML input.
SYS_ERROR:org.xml.sax.SAXException: value for 'proportionOfThickness' attribute in featureRange element must be between 0 and 1 in null at line 1192 column 147
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.handleFeatureRange(CgviewFactory.java:2215)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.startElement(CgviewFactory.java:516)
SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.AbstractXMLDocumentParser.emptyElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.createCgviewFromFile(CgviewFactory.java:300)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewIO.main(CgviewIO.java:1056)
SYS_ERROR:The following error occurred: org.xml.sax.SAXException: value for 'proportionOfThickness' attribute in featureRange element must be between 0 and 1 in null at line 1192 column 147
Done.

This is what I'm getting while plotting circular plot.
Need help

@dfl5440
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dfl5440 commented Mar 27, 2024

Did you ever figure this out??

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