[help wanted] FileNotFoundError: [Errno 2] No such file or directory for --sopa resolve baysor

[KunHHE]

Hi,
Dear community, I finished Baysor segmentation and tried to run --sopa resolve baysor C:/Users/hekun/Downloads/S3R1.zarr --gene-column genes; But an error showed up: FileNotFoundError: [Errno 2] No such file or directory:
'C:\Users\hekun\Downloads\S3R1.zarr\.sopa_cache\baysor_boundaries\0\segmentation_polygons.json'

I know there's one report in #152 report. Yes, I did notice the output for the JSON file is segmentation_polygons_2d, but not segmentation_polygons. I guess renaming all the patch folders won't help? Any suggestions?

Thanks very very much!

[quentinblampey]

Hello @KunHHE,

This is an issue that should be fixed in the next release (sopa==2.0.0), which should be released very soon. Actually, the version is ready, but I need the new version of spatialdata to be released, which is expected this week.

I'll let you know when it's released!

[KunHHE]

Dear @quentinblampey, can I ask you the new version of sopa==2.0.0? Thank you!!!

[quentinblampey]

Hello @KunHHE, it's still not released, I'm waiting for the new version of SpatialData. It should arrive soon, hopefully this week