plotIdiogram issues - SNPchip R package installation fails

[dsampath31]

SNPchip package is unable to get installed as it's not available for R>4.0.0

If I go with R 3.6.3, GenomicRanges installation fails. What's the way here to get plotIdiogram working?

Error in plotIdiogram(chr, build = "hg19", unit = "bp", label.y = label.y, :
could not find function "plotIdiogram"

[pawelqs]

The same issue here. Did you solve it in anyway?

[dsampath31]

Nope. I have to try using a package manager to see if that option works to keep different versions of R

[pawelqs]

It worked for with the following conda environment:

name: titancna_env
channels:
  - conda-forge
  - bioconda
  - r
  - dranew
  - defaults
dependencies:
  - bioconductor-titancna
  - bioconductor-snpchip
  - bioconductor-bsgenome.hsapiens.ucsc.hg19
  - r-ichorcna
  - r-domc
  - hmmcopy_utils
  - pysam # not sure if necessary
  - r-ff=2.2.14 # Before, I could not install SNPchip because of the higher ff version