DESCRIPTION

Package: eisaR
Title: Exon-Intron Split Analysis (EISA) in R
Version: 1.19.0
Authors@R: c(person("Michael", "Stadler", email = "michael.stadler@fmi.ch", role = c("aut", "cre")),
             person("Dimos", "Gaidatzis", email = "dimosthenis.gaidatzis@fmi.ch", role = "aut"),
             person("Lukas", "Burger", email = "lukas.burger@fmi.ch", role = "aut"),
             person("Charlotte", "Soneson", email = "charlotte.soneson@fmi.ch", role = "aut"))
Description: Exon-intron split analysis (EISA) uses ordinary RNA-seq data to measure
    changes in mature RNA and pre-mRNA reads across different experimental conditions
    to quantify transcriptional and post-transcriptional regulation of gene expression.
    For details see Gaidatzis et al., Nat Biotechnol 2015. doi: 10.1038/nbt.3269.
    eisaR implements the major steps of EISA in R. 
Depends: R (>= 4.1)
License: GPL-3
biocViews: 
    Transcription,
    GeneExpression,
    GeneRegulation,
    FunctionalGenomics,
    Transcriptomics,
    Regression,
    RNASeq
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Suggests: 
    knitr,
    rmarkdown,
    testthat,
    BiocStyle,
    QuasR,
    Rbowtie,
    Rhisat2,
    Biostrings,
    BSgenome,
    BSgenome.Hsapiens.UCSC.hg38,
    ensembldb,
    AnnotationDbi,
    GenomicFeatures,
    txdbmaker,
    rtracklayer
VignetteBuilder: knitr
Imports: 
    graphics,
    stats,
    GenomicRanges,
    S4Vectors,
    IRanges,
    limma,
    edgeR (>= 4.0),
    methods,
    SummarizedExperiment,
    BiocGenerics,
    utils
URL: https://github.com/fmicompbio/eisaR
BugReports: https://github.com/fmicompbio/eisaR/issues