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Add support for Stockholm files #15

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apcamargo opened this issue Sep 12, 2024 · 1 comment
Open

Add support for Stockholm files #15

apcamargo opened this issue Sep 12, 2024 · 1 comment

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@apcamargo
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Stockholm is a widely-used format for protein and nucleotide MSAs (largely due to its adoption by Pfam and Rfam). MSAs retrieved from InterPro are also provided in this format.

It would be handy if goalign supported the Stockholm files.
fredericlemoine added a commit that referenced this issue Sep 17, 2024
@fredericlemoine
Added support of Stockholm format #15
05d8e38
fredericlemoine added a commit that referenced this issue Sep 17, 2024
@fredericlemoine
Changed option for stockholm format, now -k. The previous had conflic…
e80c26d 
…ts with other commands #15
@fredericlemoine
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Hi,
Thank you for the suggestion.
I've made an initial attempt at parsing the Stockholm format, which can be accessed using the -k option.
If you try it out, feel free to let me know if you encounter any issues.

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@fredericlemoine @apcamargo