unit_tests.yml

name: test_suite

on:
  push:
    branches: ['**']
  pull_request:
    branches: ['**']
  create:
    branches: [master]
    tags: ['**']
  schedule:
    - cron: "0 4 * * *"

jobs:
  style:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: [3.8]
    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install pydocstyle flake8 check-manifest
    - name: Display versions and environment information
      run: |
        python --version
        which python
    - name: Run style & documentation tests
      run: make pep

  build:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest]
        python-version: [3.6, 3.7, 3.8, 3.9]
    steps:
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}

    - name: Update pip and wheel
      run: python -m pip install --upgrade pip wheel

    - uses: actions/checkout@v2
    - name: Build sdist
      run: python setup.py sdist
    - name: Install sdist
      run: pip install ./dist/mne-bids-*
    - name: Clean up working directory
      run: rm -rf ./*
    - name: Try importing mne_bids
      run: python -c 'import mne_bids; print(mne_bids.__version__)'
    - name: Remove sdist install
      run: pip uninstall -y mne-bids

    - uses: actions/checkout@v2
    - name: Build wheel
      run: python setup.py bdist_wheel
    - name: Install wheel
      run: pip install ./dist/mne_bids-*.whl
    - name: Clean up working directory
      run: rm -rf ./*
    - name: Try importing mne_bids
      run: python -c 'import mne_bids; print(mne_bids.__version__)'
    - name: Remove wheel install
      run: pip uninstall -y mne-bids
    
    - uses: actions/checkout@v2
    - name: Test extras install
      run: |
        pip install .[full]
        python -c 'import mne_bids; print(mne_bids.__version__)'
        python -c 'import pybv; print(pybv.__version__)'
        python -c 'import nibabel; print(nibabel.__version__)'
        python -c 'import matplotlib; print(matplotlib.__version__)'
        python -c 'import pandas; print(pandas.__version__)'

  test:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-18.04, ubuntu-latest, macos-latest, windows-latest]
        python-version: [3.8, 3.9]
        bids-validator: [master, stable]

    env:
      TZ: Europe/Berlin
      FORCE_COLOR: true
    steps:
    - uses: actions/checkout@v2
    - name: Set up Node.js
      uses: actions/setup-node@v1
      with:
        node-version: 12
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install Python dependencies using pip
      run: |
        python -m pip install --upgrade pip wheel
        pip install -r test_requirements.txt

    - name: Install MNE (stable)
      if: "matrix.os != 'ubuntu-latest'"
      run: |
        git clone --depth 1 https://github.com/mne-tools/mne-python.git -b maint/0.21
        pip install --no-deps -e ./mne-python
    - name: Install MNE (main)
      if: "matrix.os == 'ubuntu-latest'"
      run: |
        git clone --depth 1 https://github.com/mne-tools/mne-python.git -b main
        pip install --no-deps -e ./mne-python

    - name: Install BIDS validator (stable)
      if: "matrix.bids-validator == 'stable'"
      run: |
        npm install -g bids-validator

    - name: Install BIDS validator (master)
      if: "matrix.bids-validator == 'master'"
      run: |
        pushd ..
        git clone --depth 1 https://github.com/bids-standard/bids-validator
        npm install -g bids-validator/bids-validator
        popd

    - name: Display versions and environment information
      run: |
        echo $TZ
        date
        echo "npm"; npm --version
        echo "node"; node --version
        echo "bids-validator"; bids-validator --version
        python --version
        which python
        mne sys_info
    - name: Install MNE-BIDS
      run: pip install --no-deps .
    - name: Run pytest
      run: |
        export BIDS_VALIDATOR_VERSION=`bids-validator --version`
        echo Using bids-validator $BIDS_VALIDATOR_VERSION
        python -m pytest . --cov=mne_bids mne_bids/tests/ mne_bids/commands/tests/ --cov-report=xml --cov-config=setup.cfg --verbose --ignore mne-python
      shell: bash
    - name: Upload coverage stats to codecov
      if: "matrix.os == 'ubuntu-latest'"
      uses: codecov/codecov-action@v1
      with:
        file: ./coverage.xml