-
Notifications
You must be signed in to change notification settings - Fork 1.1k
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Recent python:3.9-slim causing some libraries to break after removing --with-system-expat #984
Comments
Found a workaround myself. From the
So I added to my dockerfile: RUN apt-get update && apt-get install libexpat1 -y Right after the So, it can be closed if the removal of |
same issue with 3.12-slim and another geospatial library (GDAL). Fixed it by pinning to 3.12.6 but I guess the way to go is to explicitly install this kind of dependencies by hand in the dockerfile like @mati-o did isn't it? |
same issue from 3.10.14 to 3.10.15 and uwsgi that need the library (libexpact) |
The removal was intentional -- can you elaborate on what the problem is? What's the error message? Is there an easy way to reproduce the problem? |
Managed to get a clean reproducer: $ docker run -it --rm --pull=always python:3.9-slim bash
3.9-slim: Pulling from library/python
Digest: sha256:7a9cd42706c174cdcf578880ab9ae3b6551323a7ddbc2a89ad6e5b20a28fbfbe
Status: Image is up to date for python:3.9-slim
root@708fcd2277b5:/# pip install fiona
Collecting fiona
Downloading fiona-1.10.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.3/17.3 MB 27.4 MB/s eta 0:00:00
Collecting attrs>=19.2.0
Downloading attrs-24.2.0-py3-none-any.whl (63 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 63.0/63.0 kB 14.9 MB/s eta 0:00:00
Collecting click~=8.0
Downloading click-8.1.7-py3-none-any.whl (97 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 97.9/97.9 kB 22.9 MB/s eta 0:00:00
Collecting certifi
Downloading certifi-2024.8.30-py3-none-any.whl (167 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 167.3/167.3 kB 37.4 MB/s eta 0:00:00
Collecting click-plugins>=1.0
Downloading click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB)
Collecting cligj>=0.5
Downloading cligj-0.7.2-py3-none-any.whl (7.1 kB)
Collecting importlib-metadata
Downloading importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
Collecting zipp>=3.20
Downloading zipp-3.20.2-py3-none-any.whl (9.2 kB)
Installing collected packages: zipp, click, certifi, attrs, importlib-metadata, cligj, click-plugins, fiona
Successfully installed attrs-24.2.0 certifi-2024.8.30 click-8.1.7 click-plugins-1.1.1 cligj-0.7.2 fiona-1.10.1 importlib-metadata-8.5.0 zipp-3.20.2
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
[notice] A new release of pip is available: 23.0.1 -> 24.2
[notice] To update, run: pip install --upgrade pip
root@708fcd2277b5:/# python
Python 3.9.20 (main, Oct 19 2024, 01:00:38)
[GCC 12.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import fiona
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python3.9/site-packages/fiona/__init__.py", line 42, in <module>
from fiona._env import (
ImportError: libexpat.so.1: cannot open shared object file: No such file or directory While unfortunate, yes, this does mean you'll want/need to install |
@tianon thanks for the response! I'll include it wherever needed in my images. |
Hey, thanks for your great effort in this project and I apologize ahead if my issue is not an issue :).
With the recent
3.9-slim
, after merging #980 , the--with-system-expat
flag was removed along withlibexpat-dev
, this causes all my images to break since a requirement I use extensively ,fiona
, needs it.Assuming this change is mandatory, I would be happy for a solution, workaround or whatever can help me get through it. Many thanks!
The text was updated successfully, but these errors were encountered: