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DESCRIPTION
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DESCRIPTION
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Package: rcell2
Title: CellID Data Analysis Inside the Tidyverse
Version: 0.0.3
Authors@R: c(
person("German", "Beldorati Stark", , "[email protected]", role = c("aut", "cre")),
person("Nicolás", "Agustín Méndez", , "[email protected]", role = "aut"),
person("Andreas", "Constantinou", , "[email protected]", role = "aut"),
person("Alan", "Bush", , "[email protected]", role = "aut")
)
Description: Analyse cellID data in the tidyverse framework. This package
also has utility functions to generate, filter and preview data from
fluorescence microscopy experiments (and maybe general cell
cytometry). Included are the tools to process CellID output (from
tidyCell). Also, rcell2 interfaces directly with two other packages.
The rcell2.cellid package bundles the CellID program source, and wraps
it in a single R function. The rcell2.magick package offers R-Shiny
apps and magick-based functions to help users preview cell images and
filter data graphically. This group of packages is meant to succeed
the older RCell package.
License: MIT + file LICENSE
Depends:
R (>= 3.6)
Imports:
data.table,
digest,
doParallel,
dplyr,
EBImage,
foreach,
ggplot2,
grDevices,
parallel,
plyr,
purrr,
readr,
reshape,
rlang,
sp,
stringr,
tibble,
tidyr,
xml2
Suggests:
covr,
ijtiff,
tiff,
skimr,
testthat (>= 3.0.0),
tidyverse
biocViews:
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Config/testthat/edition: 3