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DESCRIPTION
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DESCRIPTION
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Package: rcell2.magick
Title: R tools for analyzing cytometry data from microscopy images, based on R-Shiny ImageMagick.
Version: 0.0.3
Authors@R:
c(person(given = "German",
family = "Beldorati Stark",
role = c("aut"),
email = "[email protected]"),
person(given = "Nicolás",
family = "Agustín Méndez",
role = c("aut", "cre"),
email = "[email protected]"))
Description: Analyse cellID data in the tidyverse framework. This package also has utility functions to generate, filter and preview data
from fluorescence microscopy experiments (and maybe general cell cytometry).
It is meant as a successor to the older RCell package.
This package includes the CellID program source, and wraps it in a single R function.
Also included are the tools to process CellID output (from tidyCell).
Finally, a R-Shiny app will help users filter data graphically, with previews.
License: GPL + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
Depends:
R (>= 3.6)
biocViews: Software, BiologicalQuestion
Imports:
tibble,
dplyr,
IRanges,
sp,
tidyr,
ggplot2,
magick,
foreach,
shiny,
hexbin,
shinydashboard,
formattable,
grDevices,
reshape2,
readr,
shinyjs,
rlang,
data.table,
keys,
shinycssloaders
Suggests:
tidyverse,
skimr